View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6844_low_2 (Length: 713)
Name: NF6844_low_2
Description: NF6844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6844_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 44 - 430
Target Start/End: Original strand, 6917535 - 6917921
Alignment:
| Q |
44 |
catcaagattgagcgcggcgaggttgattccgaaacatataggttctgattttccttttgcttgttgtttgagcacactcaatataaaatgctaaatgca |
143 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917535 |
catcaagattgagcgcggcgaggttgatttcgaaacatataggttctgattttccatttgcttgttgtttgagcacactcaatataaaatgctaaatgca |
6917634 |
T |
|
| Q |
144 |
cagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatttgatga |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917635 |
cagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatttgatga |
6917734 |
T |
|
| Q |
244 |
ctgttcttggcacacatgcatgctgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaaagtcaa |
343 |
Q |
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| T |
6917735 |
ctgttcttggcacatatgcatgatgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaaagtcaa |
6917834 |
T |
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| Q |
344 |
atggcttatgtcatgagaacaacaaggttacatggtcgtttccaagatcaatggtaaaggttaaaaacttgaagtaatggtaatttg |
430 |
Q |
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| T |
6917835 |
atggcttatgtcatgagaacaacaaggttacatggtcatttccaagatcaacggtaaaggttaaaaacttgaagtaatggtaatttg |
6917921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 458 - 684
Target Start/End: Complemental strand, 34821448 - 34821221
Alignment:
| Q |
458 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatgattttatatttaacaatgctgtcatac |
557 |
Q |
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| T |
34821448 |
aataaaaagattcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttag |
34821349 |
T |
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| Q |
558 |
atactgaagagttgttagaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaa |
657 |
Q |
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|| ||| | |||| |||||||| |||||||| | |||||||||||||| || ||||| || |||| | || ||||||||||| |||| ||||| |
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| T |
34821348 |
attttgaggcactgttggaatcaataaaggttttgtggtggaggtggtgtttaggtcgattggatgtgccgtcttgtttgttttacgaatggagctggaa |
34821249 |
T |
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| Q |
658 |
tccgaagga-ttgtttgatgcggtgatg |
684 |
Q |
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| T |
34821248 |
tccaaaggatttgtttgatgcggtgatg |
34821221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 684
Target Start/End: Complemental strand, 38185520 - 38185266
Alignment:
| Q |
430 |
gtgggaatgttggaatgacgcggcatctaataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaat |
529 |
Q |
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|||||||||||||||| |||| | |||||| ||||| |||| || |||||| |||| ||||||| ||| ||||||| ||| |||||||| |||||| |
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| T |
38185520 |
gtgggaatgttggaattgagcggtttataataaaaagatttgtaagggagtgaggcttatttggcatgccgccatttggagcatatggaaagctaggaat |
38185421 |
T |
|
| Q |
530 |
gattttatatttaacaatgctgtcatacatactgaagagttgttagaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccgg |
629 |
Q |
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||| | | ||||| ||||| || | || ||| | ||| | ||||| |||||||| || | |||||||||||||| || ||| | || | ||||| |
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| T |
38185420 |
gatataacttttaataatgcagtgttggattgtgaggcattgctggaatctattaaggtgttggcctggaggtggtgttttggtagaataaacttgccgg |
38185321 |
T |
|
| Q |
630 |
cgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtgatg |
684 |
Q |
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| T |
38185320 |
catgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgatg |
38185266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 682
Target Start/End: Original strand, 53562335 - 53562433
Alignment:
| Q |
584 |
aaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtga |
682 |
Q |
| |
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|||||||| |||||||||||| ||||||| ||||| || | |||||||| ||||| |||||||||| |||||||| ||||| ||||||||||||||| |
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| T |
53562335 |
aaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtga |
53562433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 582 - 684
Target Start/End: Complemental strand, 22153664 - 22153562
Alignment:
| Q |
582 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
681 |
Q |
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||||||| || ||||||||||| | |||||| || |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |
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| T |
22153664 |
ttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtg |
22153565 |
T |
|
| Q |
682 |
atg |
684 |
Q |
| |
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||| |
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| T |
22153564 |
atg |
22153562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 582 - 684
Target Start/End: Complemental strand, 22209579 - 22209477
Alignment:
| Q |
582 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
681 |
Q |
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||||||| || ||||||||||| | |||||| || |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |
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| T |
22209579 |
ttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtg |
22209480 |
T |
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| Q |
682 |
atg |
684 |
Q |
| |
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||| |
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| T |
22209479 |
atg |
22209477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 670
Target Start/End: Original strand, 1557362 - 1557457
Alignment:
| Q |
575 |
gaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgt |
670 |
Q |
| |
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|||||||||||||| || || ||||||||||||||||| ||||||| | ||| || || ||||||||||| |||| ||||||||||||| ||||| |
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| T |
1557362 |
gaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgt |
1557457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 582 - 684
Target Start/End: Original strand, 4903893 - 4903995
Alignment:
| Q |
582 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
681 |
Q |
| |
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||||||| || |||||||| |||| |||||| || ||||||||| |||| |||||||| ||||||| |||||||| ||||||||||||| ||||||| |
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| T |
4903893 |
ttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcggtg |
4903992 |
T |
|
| Q |
682 |
atg |
684 |
Q |
| |
|
||| |
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| T |
4903993 |
atg |
4903995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 531
Target Start/End: Original strand, 1557245 - 1557318
Alignment:
| Q |
458 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatga |
531 |
Q |
| |
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||||| ||||| || || || |||||| |||| ||||||| | | |||||||||||||||||||| |||||||| |
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| T |
1557245 |
aataaaaagattcggaagggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatga |
1557318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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