View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6844_low_4 (Length: 482)
Name: NF6844_low_4
Description: NF6844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6844_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 21 - 469
Target Start/End: Complemental strand, 35501666 - 35501218
Alignment:
| Q |
21 |
tatggaagagacaggggggtggtaaatcaattgaagttgacaaatcagacatagtgagcgtgacatggatgaaggttccaaagagtaatcaacttggtgt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501666 |
tatggaagagacaggggggtggtaaatcaattgaagttgacaaatcagacatagtgagcgtgacatggatgaaggttccaaagagtaatcaacttggtgt |
35501567 |
T |
|
| Q |
121 |
tcagatcaaagatgggttgttctacaaattcactggatttcgtgatcaggttactttctgcccctcctgaatgtccaattacatatatttgtagactaag |
220 |
Q |
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| T |
35501566 |
tcagatcaaagatgggttgttctacaaattcactggatttcgtgatcaggttactttctgcccctcctgaatgtccaattacatatatttgtagactaag |
35501467 |
T |
|
| Q |
221 |
gaattcaaatatctggtttgttttcttatgtttgttcctttgattaacattttgacagatatagatattaatgactgggacttagattggcatcacatat |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501466 |
gaattcaaatatctggtttgttttcttatgtttgttcctttgactaacattttgacagatatagatattaatgactgggacttagattggcatcacatat |
35501367 |
T |
|
| Q |
321 |
catttcttatgttgatattttctattttgcaggatgttgtaagtttgaccagttttttccaaaacacctttggaataactgtaaaggagaagcaactttc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501366 |
catttcttatgttgatattttctattttgcaggatgttgtaagtttgaccagttttttccaaaacacctttggaataactgtaaaggagaagcaactttc |
35501267 |
T |
|
| Q |
421 |
tgttagcgggcgcaattggggagaagttgatttaaatggtcagtgatgt |
469 |
Q |
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| T |
35501266 |
tgttagtgggcgcaattggggagaagttgatttaaatggtcagtgatgt |
35501218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 7069785 - 7069935
Alignment:
| Q |
21 |
tatggaagagacaggggggtggtaaatcaattgaagttgacaaatcagacatagtgagcgtgacatggatgaaggttccaaagagtaatcaacttggtgt |
120 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||||| |||||||| | | || |||||||||||||||||||||| |||||||| ||||| |
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| T |
7069785 |
tatggaagagacagggaggtggtaaatcaattgatgttgacaaggcagacataacgggagtaacatggatgaaggttccaaagacaaatcaactcggtgt |
7069884 |
T |
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| Q |
121 |
tcagatcaaagatgggttgttctacaaattcactggatttcgtgatcaggt |
171 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7069885 |
tcagatcaaagatgggttgttctacaaattcactggtttccgtgatcaggt |
7069935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 343 - 460
Target Start/End: Original strand, 7070123 - 7070240
Alignment:
| Q |
343 |
tattttgcaggatgttgtaagtttgaccagttttttccaaaacacctttggaataactgtaaaggagaagcaactttctgttagcgggcgcaattgggga |
442 |
Q |
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||||||| ||||||||||||| ||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
7070123 |
tattttgtaggatgttgtaagcttgacaagtttcttccaaaacaccttcggagtaactgttggggagaagcaactttctgttactgggcgcaattgggga |
7070222 |
T |
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| Q |
443 |
gaagttgatttaaatggt |
460 |
Q |
| |
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||||||||| |||||||| |
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| T |
7070223 |
gaagttgatctaaatggt |
7070240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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