View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_high_12 (Length: 254)
Name: NF6845_high_12
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 38613610 - 38613476
Alignment:
| Q |
1 |
gccaaacttgctacgagatagaaaaataaataaaagtagagaacaaagaaggagatggaacggcaccttcagatatgaagttcctgaatttgttggcaaa |
100 |
Q |
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| T |
38613610 |
gccaaacttgttacgagatagaaaaataaataaaagtagagaacaaagaaggagatggaacggcaccttcagatatgaagttcctgaatttgttggcaaa |
38613511 |
T |
|
| Q |
101 |
gcaaaggagctctgtgaaatatttagtaagaatta |
135 |
Q |
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| T |
38613510 |
gcaaaggagctctgtggaatatttagtaagaatta |
38613476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 38612218 - 38612107
Alignment:
| Q |
127 |
taagaattaacatcagatcattttctaaacaggaaaaatacaagagataacaccaataataacggcaccagaagaatgagcgaaggtgttgggcattgta |
226 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38612218 |
taagaattaacatcagatcattttctaaacagaaaaaatacaagagataacaccaataataacggcaccagaagaatgagcgaaggtgttgggcattgta |
38612119 |
T |
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| Q |
227 |
atttaaaagtga |
238 |
Q |
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| T |
38612118 |
atttaaaagtga |
38612107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 14667294 - 14667244
Alignment:
| Q |
181 |
aataataacggcaccagaagaatgagcgaaggtgttgggcattgtaattta |
231 |
Q |
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|||||||||| | ||||||||||||| |||||||| |||||||||||||| |
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| T |
14667294 |
aataataacgccgccagaagaatgaggaaaggtgttaggcattgtaattta |
14667244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 1012544 - 1012494
Alignment:
| Q |
181 |
aataataacggcaccagaagaatgagcgaaggtgttgggcattgtaattta |
231 |
Q |
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|||||||||| | ||||||||||||| |||||||| |||||||||||||| |
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| T |
1012544 |
aataataacgccgccagaagaatgaggaaaggtgttaggcattgtaattta |
1012494 |
T |
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