View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_high_2 (Length: 629)
Name: NF6845_high_2
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 30 - 610
Target Start/End: Complemental strand, 41890497 - 41889914
Alignment:
| Q |
30 |
tgagaattatgtacagaagattatcatgtattagttgtacaagtactggctacaacagcattctactagatcaggttctgcagagttgttctgaagagga |
129 |
Q |
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| T |
41890497 |
tgagaattatgtacagaagattatcatgtattagttgtacaagtactagctacaacagcattcta---gatcaggttctgcagagttgttctgaagagga |
41890401 |
T |
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| Q |
130 |
attcaaccgtacgaagtttaaattaaagttatgtacagtaagatatgaaagcaaacattaaattgggttccttgactgcaaaggatatattcgatatcat |
229 |
Q |
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| T |
41890400 |
attcaaccgtacgaagtttaaattaaagttatgtacagtaagatatgaaagcaaacattaaattgggttccttgactgcaaaggatatattcgatatcat |
41890301 |
T |
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| Q |
230 |
tgtat-----ccgtgcatcggtgatcaatgcatgcatgccattgccaacagtgttgtcaaactgatttcagcttataagtctaaaataaaaacgagaatg |
324 |
Q |
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| T |
41890300 |
tgtattgtatccgtgcatcggtgatcaatgcatgcatgccattgccaacagtgttgtcaaactgatttcagcttataagtcaaaaataaaaacgagaatg |
41890201 |
T |
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| Q |
325 |
cagtttacttaacgagacttgattagcaatgtaacttaacgtcaaaaaactaattccatattcttccacagcaaaaagtattctatttat-aacaactaa |
423 |
Q |
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| T |
41890200 |
cagtttacttaacgagacttgattagcaatgtaacttaacgtcaaaaaactaattccatattcttccacagcaaaaagtattctatttataaacaactaa |
41890101 |
T |
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| Q |
424 |
tttaattgaaggagggagagagaaaaatactctaattttttaaaatgtgaatgctagtatattattagtgttatgaaaacacaataaatcaagggtttaa |
523 |
Q |
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| T |
41890100 |
tttaattgaaggagggagagagaaaaatactctaattttttgaaaggtgaatgctagtattttattagtgttatgaaaacacaataaatcaagggtttaa |
41890001 |
T |
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| Q |
524 |
attgtgttgatcaaagatcctgatttcaacgaacttttttaatctcctgtgaagatcgcgatttaacttaagtttctttgtcttctt |
610 |
Q |
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| T |
41890000 |
attgtgttgatcaaagatcctaatttcaacgaacttttttaatctcctgtgaagatcgcgatttaacttaagtttctttgtcttctt |
41889914 |
T |
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