View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_high_3 (Length: 489)
Name: NF6845_high_3
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 87 - 416
Target Start/End: Complemental strand, 38612044 - 38611715
Alignment:
| Q |
87 |
cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggaacatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg |
186 |
Q |
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| T |
38612044 |
cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggagcatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg |
38611945 |
T |
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| Q |
187 |
ttattcccgacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatccacagccannnnnnnnnnnnnnnnnn |
286 |
Q |
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| T |
38611944 |
gtattccccacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatccacagccagtttgttgttgttgttgt |
38611845 |
T |
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| Q |
287 |
nacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttca |
386 |
Q |
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| T |
38611844 |
tacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttca |
38611745 |
T |
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| Q |
387 |
tcttcaattagggatattagcaaaacattt |
416 |
Q |
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| T |
38611744 |
tcatcaattagggatattagcaaaacattt |
38611715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38612130 - 38612088
Alignment:
| Q |
1 |
ttgggcattgtaatttaaaagtgaggtgcaaatgtaagggcgt |
43 |
Q |
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| T |
38612130 |
ttgggcattgtaatttaaaagtgaggtgcaaatgtaagggcgt |
38612088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 34722229 - 34722165
Alignment:
| Q |
348 |
tctacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaac |
412 |
Q |
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| T |
34722229 |
tctacatcagggagttcgaaatcagattcaatcagttcatcaccaactagggatattagcaaaac |
34722165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 414
Target Start/End: Complemental strand, 34731519 - 34731457
Alignment:
| Q |
352 |
catcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacat |
414 |
Q |
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| T |
34731519 |
catcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaataatagcaaaacat |
34731457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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