View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_high_4 (Length: 428)
Name: NF6845_high_4
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 15363686 - 15363289
Alignment:
| Q |
1 |
tccgtcgatgccgtcgccgacgcttctgattcttccgttgaaaaggttgtcacttccactcctagtttgcttcaacctagagttgtactttacgacggcg |
100 |
Q |
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| T |
15363686 |
tccgtcgctgccgtcgccgacgcttctgattcttccgttgaaaaggttgttacttccactcctagtttgcttcaacctagagttgtactttacgacggcg |
15363587 |
T |
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| Q |
101 |
tttgtcatctctgtcaccaaggtattaccttcactcttcccattcttcactccctgttctgttctgttttgtattgttactatgaactgagaatgagaat |
200 |
Q |
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| T |
15363586 |
tttgtcatctctgtcaccaaggtatttcctttactattctcattct------------ctgttctgttctgtattgttactatgaactgagaatgagaat |
15363499 |
T |
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| Q |
201 |
ggtgttttctttttgcttcattgtttattctgtctagaattttatatatgcccaaattagggttttagagtaagattgtagcttttccaatgtgttggca |
300 |
Q |
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| T |
15363498 |
ggtgttttctttttgcttctttgtttattctgtctaaaattttatatatgcccaaattagggttttagagtaagattgtagcttttccaatgtgttggca |
15363399 |
T |
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| Q |
301 |
tatattggtgaaagctatgaatcactgccactaagggagttgagtagctcagtaaattggtttgagccaaagacgttagagttaaattctatgaactaag |
400 |
Q |
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| T |
15363398 |
tatattggtgaaagctatgaatcactgccactaagggagttgagtagctcagtaaattggtttgagctaaagacgttagagttaaattctatgaactaag |
15363299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 15363310 - 15363242
Alignment:
| Q |
180 |
ctatgaactgagaatgagaatggtgttttctttttgcttcattgtttattctgtctagaattttatatat |
249 |
Q |
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| T |
15363310 |
ctatgaactaagattgagaatggtgtttcatttttgctt-attgctggttctgtctataattttatatat |
15363242 |
T |
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