View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_high_7 (Length: 334)
Name: NF6845_high_7
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 53676850 - 53676551
Alignment:
| Q |
17 |
atgatgttaaggaattgtaatttgaaatgaataatgatgtagaaaattgtgtaagtagaagcatgcttttggactcaagttgaggatttaggaacaatga |
116 |
Q |
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| T |
53676850 |
atgatgttaaggaattgtaatttgaaatgaataatgatgtagaaaattgtggaagtagaagcctgcttgtggactcaagttgaggatttaggaacaatga |
53676751 |
T |
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| Q |
117 |
cgtagaaattgtaattttatttagcttgtctgcatatttgtcatggaacttttcaatgctgaaaattttactatctgttatgtgtgcagttgatgtagat |
216 |
Q |
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| T |
53676750 |
cgtagaaattgtaattttatttagcttgtctgcatatttgtcatggaacttttcaatgctgaaaattttactatctgttatgtgtgcagttgatgtagat |
53676651 |
T |
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| Q |
217 |
aattcattacttttgggaaaaggaacaatagaaggaaaatttgattgtggttatttagtgtcagtggaattgggttcagaagttctcaaaggggtgcttt |
316 |
Q |
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| T |
53676650 |
aattcattacttttgggaaaaggaacaatagaaggaaaatttgattgtggttatttagtgtcagtggaattgggttcagaagttctcaaaggggtgcttt |
53676551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 34131221 - 34131071
Alignment:
| Q |
17 |
atgatgttaaggaattgtaatttgaaatgaataatgatgtagaaaattgtgtaagtagaagcatgcttttggactcaagttgaggatttaggaacaa--- |
113 |
Q |
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|||||| ||| ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
34131221 |
atgatgctaacgaattgtaatttgaaatgaataatgatttagaaaattgtagaggtagaagcatgcttgtggactccagttgaggatttaggaacaatat |
34131122 |
T |
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| Q |
114 |
tgacgtagaaattgtaattttatttagcttgtctgcatatttgtcatggaa |
164 |
Q |
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| T |
34131121 |
tgacatagaaattgtaattttatttaacttgtctgcatatttgtcatggaa |
34131071 |
T |
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