View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_high_8 (Length: 329)
Name: NF6845_high_8
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_high_8 |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 10289732 - 10290061
Alignment:
| Q |
1 |
gagttcgaaaaaatattcacactgcattgaaaa-aatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttt |
99 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10289732 |
gagttcgaaaaaatattcacactgcattgaaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttt |
10289831 |
T |
|
| Q |
100 |
tcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10289832 |
tcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggca |
10289931 |
T |
|
| Q |
200 |
caacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacatatg |
299 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10289932 |
caacagtattgtttcttgctgacagatcaggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcatgaacactgctgcacacatatg |
10290031 |
T |
|
| Q |
300 |
caggactaggaggtacctcagtgtagttct |
329 |
Q |
| |
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||||||||||||||||||| |||||||||| |
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| T |
10290032 |
caggactaggaggtacctcggtgtagttct |
10290061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 27 - 329
Target Start/End: Complemental strand, 9747748 - 9747449
Alignment:
| Q |
27 |
ttgaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattg |
126 |
Q |
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||||||||| |||||| ||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |
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| T |
9747748 |
ttgaaaaaagattatttgtcgataaaattgcacatgaagtaagaacataataaaacaacattaaccggctttt-cttaaatcaaaactatggtatcattg |
9747650 |
T |
|
| Q |
127 |
ctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagat |
226 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||| |||||||| |||||||| ||||||| | ||||| |||| || |
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| T |
9747649 |
ctcaatgcttgaaacttaagaattctatcgtaccatttagaccagagctgatgtctcggaaaactt-gtggcacagcagtatcatctcttgaggacaaat |
9747551 |
T |
|
| Q |
227 |
cgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagt |
326 |
Q |
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| T |
9747550 |
caggagtt-gatattggacttaaatattcggttcgcctccaaaagtcttcatggacactgctgcacacagatgcaggactaggaggtacctcagtgtagt |
9747452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 48 - 329
Target Start/End: Original strand, 10297933 - 10298182
Alignment:
| Q |
48 |
atataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaaga |
147 |
Q |
| |
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|||||||||| | ||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||| | | |||||||| |
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| T |
10297933 |
atataattgcacgggaagtaaaagcataataaaacaacattaaccgccttttt-ttgtatcaaaactatggtatgaat--------------acttaaga |
10298017 |
T |
|
| Q |
148 |
attttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagatcgggagtttgatattggactt |
247 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| |||| | |||||| || |
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| T |
10298018 |
attttattgtaccatttaaaccagagctgatgtctctgaaaac-ttgtggcacaacagtatcgtctcttgatgac--------------aaattggattt |
10298102 |
T |
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| Q |
248 |
aaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttct |
329 |
Q |
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||| |||||||||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
10298103 |
aaacattcgattcgcctccagaagtcttcatgaacactgctgcacac--atgctggactaggaggtacctcagtgtagttct |
10298182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 329
Target Start/End: Original strand, 34694209 - 34694438
Alignment:
| Q |
99 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc |
198 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||| ||||||| |
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| T |
34694209 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaa--cttgtggc |
34694306 |
T |
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| Q |
199 |
acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- |
295 |
Q |
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||| ||||||| ||| | |||| ||| |||| ||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||| |
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| T |
34694307 |
acagcagtatc--atctcgaggacaaatcaggag-ttgatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat |
34694403 |
T |
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| Q |
296 |
-tatgcaggactaggaggtacctcagtgtagttct |
329 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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| T |
34694404 |
gcatgcagtactaggaggtacctcagtgtagttct |
34694438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 329
Target Start/End: Original strand, 34716621 - 34716850
Alignment:
| Q |
99 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc |
198 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||| ||||||| |
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| T |
34716621 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaa--cttgtggc |
34716718 |
T |
|
| Q |
199 |
acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- |
295 |
Q |
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||| ||||||| ||| | |||| ||| |||| ||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||| |
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| T |
34716719 |
acagcagtatc--atctcgaggacaaatcaggag-ttgatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat |
34716815 |
T |
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| Q |
296 |
-tatgcaggactaggaggtacctcagtgtagttct |
329 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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| T |
34716816 |
gcatgcagtactaggaggtacctcagtgtagttct |
34716850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 97 - 329
Target Start/End: Complemental strand, 37744192 - 37743966
Alignment:
| Q |
97 |
ttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtg |
196 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||| |||| ||||| |
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| T |
37744192 |
ttttcttaaatcaaaactaaagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagttgatttctcggaaac--ttgtg |
37744095 |
T |
|
| Q |
197 |
gcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacat |
296 |
Q |
| |
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||||||||||||| | || | ||| ||| |||||| |||||| || |||||||||| || ||||| ||||||||||| ||||| ||||||| ||| |
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| T |
37744094 |
gcacaacagtatcatctcggg---acaaatcaggagtt-gatatttgaattaaatattcagttggcctctaaaagtcttcatgaacattgctgcatacag |
37743999 |
T |
|
| Q |
297 |
atgcaggactaggaggtacctcagtgtagttct |
329 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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|
| T |
37743998 |
atgcagtactaggaggtacctcagtgtagttct |
37743966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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