View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6845_high_9 (Length: 294)
Name: NF6845_high_9
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 6228220 - 6227983
Alignment:
| Q |
9 |
atctttaacaagagattttaatcaaattggatggatcatggatatatcattgattttgagttgaaatcnnnnnnnnnnnnnnnaagttaaaatcttaact |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
6228220 |
atcttgaacaagagattttaatcaaattggatggatcatggatatatcattgagtttgagttgaaatcttttttttcttttttaagttaaaatcttaact |
6228121 |
T |
|
| Q |
109 |
acatacaataaatttctttgagaggacatacgataactctgtaaatatttattttggtagtttcgtttcattatgtgatcgttgttttatttttggacgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6228120 |
acatacaataaatttctttgagaggacatacgataactctgtaaatatttattttggtagtttcgtttcattatgtgatcgttgttttatttttggacgg |
6228021 |
T |
|
| Q |
209 |
aaattaattaggtgattcttatcaagaaattattctta |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6228020 |
aaattaattaggtgattcttatcaagaaattattctta |
6227983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University