View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6845_low_15 (Length: 292)
Name: NF6845_low_15
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_low_15 |
 | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 28575346 - 28575075
Alignment:
| Q |
19 |
tgaagtacaaatatgtacagttattctaaacttagttacaacatagctttatttcaatgttctgatcaatctgcactttgactttttcaggatgttacat |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28575346 |
tgaagtacaaatatatacagttattctaaacttagttacaacatagctttatttcaatgttctgatcaatctgcactttgactttttcaggatgttacat |
28575247 |
T |
|
| Q |
119 |
atgttaagcaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagattcaatggagagtttttatttgatcgatatcatccaaaggtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
28575246 |
atgttaagcaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagattcgatggagagtttttatttgatcgatatcatccaaaggtt |
28575147 |
T |
|
| Q |
219 |
tggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgatattgaacaccaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575146 |
tggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgatattgaacaccaa |
28575075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 28586509 - 28586285
Alignment:
| Q |
66 |
tttatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgtt |
165 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28586509 |
tttatttcaatattctgatcaatctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgtt |
28586410 |
T |
|
| Q |
166 |
aaaatcgaagattcaatggagagtttttatttgatcgatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaa |
265 |
Q |
| |
|
||||| |||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586409 |
aaaattgaagatccgatggaaagtttttatttgatcgatattatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaa |
28586310 |
T |
|
| Q |
266 |
agctacatttgatattgaacaccaa |
290 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
28586309 |
agctacatttgacattgaacaccaa |
28586285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 28568510 - 28568235
Alignment:
| Q |
19 |
tgaagtacaaatatgtacagttattctaaacttagttacaacata----gctttatttcaatgttctgatcaatctgcactttgactttttcaggatgtt |
114 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| | || ||| |||||||| |
|
|
| T |
28568510 |
tgaagtacgaatatatacagctattctaaatttagttacaacatatatagctttatttcaatattctgatcaatctgcactcttacaattttaggatgtt |
28568411 |
T |
|
| Q |
115 |
acatatgttaagcaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagattcaatggagagtttttatttgatcgatatcatccaaa |
214 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
28568410 |
gtatatgtcaaacaagctttaatatttaagcaagtttataagaaacttgttaaaatcgaagatccgatggagagtttttatttgatggatattatccaaa |
28568311 |
T |
|
| Q |
215 |
ggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgatattgaacaccaa |
290 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
28568310 |
ggtttggtattgagcactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacaccaa |
28568235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 26316357 - 26316133
Alignment:
| Q |
66 |
tttatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgtt |
165 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| || ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26316357 |
tttatttcaatgttctcatcattctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgtt |
26316258 |
T |
|
| Q |
166 |
aaaatcgaagattcaatggagagtttttatttgatcgatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaa |
265 |
Q |
| |
|
||||||||| || | |||||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||| |||||||||||||||||||| | |
|
|
| T |
26316257 |
aaaatcgaatatccgatggagagtttttatttgatcgatatcatccaaaggcttaacattgaacactactttgttgaagagatcaaagtggctcttgaga |
26316158 |
T |
|
| Q |
266 |
agctacatttgatattgaacaccaa |
290 |
Q |
| |
|
||||| ||| ||||||||||||||| |
|
|
| T |
26316157 |
agctatattcgatattgaacaccaa |
26316133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 66 - 286
Target Start/End: Complemental strand, 28580352 - 28580132
Alignment:
| Q |
66 |
tttatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgtt |
165 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| || ||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28580352 |
tttattgcaatgttctgatcaatctacacttttacattttcaggacgttacatatgtcaaacaagctttgatattcaagcaagtttataagaaacttgtt |
28580253 |
T |
|
| Q |
166 |
aaaatcgaagattcaatggagagtttttatttgatcgatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaa |
265 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
28580252 |
aaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttaccgaggagatcaaagtggctcttgaaa |
28580153 |
T |
|
| Q |
266 |
agctacatttgatattgaaca |
286 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
28580152 |
aactacatttgatattgaaca |
28580132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 283
Target Start/End: Complemental strand, 20618667 - 20618486
Alignment:
| Q |
102 |
ttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagattcaatggagagtttttatttgatc |
201 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||| | |||||||||| | ||||||||||||| | |||||| ||| |||| |||| ||||||| |
|
|
| T |
20618667 |
ttttcaggatgctatttatgtcaagcaagctttgatgtgtaagcaagttcacaagaaacttgttactagtgaagatccaactgagaattttcatttgatt |
20618568 |
T |
|
| Q |
202 |
gatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgatattga |
283 |
Q |
| |
|
|| |||||||||||| |||| ||||||||||| |||| |||||| ||||||||||||||||| || | | ||||||||||| |
|
|
| T |
20618567 |
gacatcatccaaaggcttggtattgaacactactttgttgaggaaatcaaagtggctcttgagaaacaatttttgatattga |
20618486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 4378 - 4650
Alignment:
| Q |
19 |
tgaagtacaaatatgtacagttattctaaacttagttacaacatagctttat---ttcaatgttctgatcaatctgcactttgactttttcaggatgtta |
115 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||| ||||||| || |||| |||||||| |
|
|
| T |
4378 |
tgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaat--gcacttttacatttttaggatgttt |
4475 |
T |
|
| Q |
116 |
catatgttaagcaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagattcaatggagagtttttatttgatcgatatcatccaaag |
215 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
4476 |
tatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgatcgatattatccaaag |
4575 |
T |
|
| Q |
216 |
gtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgatattgaacaccaa |
290 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || || |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
4576 |
gtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatctgcatttgatattgaacaccaa |
4650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 4582 - 4854
Alignment:
| Q |
19 |
tgaagtacaaatatgtacagttattctaaacttagttacaacatagctttat---ttcaatgttctgatcaatctgcactttgactttttcaggatgtta |
115 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||| ||||||| || |||| |||||||| |
|
|
| T |
4582 |
tgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaat--gcacttttacatttttaggatgttt |
4679 |
T |
|
| Q |
116 |
catatgttaagcaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagattcaatggagagtttttatttgatcgatatcatccaaag |
215 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
4680 |
tatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgatcgatattatccaaag |
4779 |
T |
|
| Q |
216 |
gtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgatattgaacaccaa |
290 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || || |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
4780 |
gtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatctgcatttgatattgaacaccaa |
4854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 68 - 290
Target Start/End: Complemental strand, 24071978 - 24071756
Alignment:
| Q |
68 |
tatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgttaa |
167 |
Q |
| |
|
||||| ||||||||||||||| |||||||| || ||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24071978 |
tattttaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgagaaacttgttaa |
24071879 |
T |
|
| Q |
168 |
aatcgaagattcaatggagagtttttatttgatcgatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaag |
267 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||| ||| |||||||||| |||||||||||| |
|
|
| T |
24071878 |
aatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagcggctcttgaaaac |
24071779 |
T |
|
| Q |
268 |
ctacatttgatattgaacaccaa |
290 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
24071778 |
ttgcatttgatattgaacaccaa |
24071756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 233
Target Start/End: Original strand, 3157 - 3324
Alignment:
| Q |
66 |
tttatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgtt |
165 |
Q |
| |
|
|||||||||| || |||||||||||||||||| || ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3157 |
tttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgtt |
3256 |
T |
|
| Q |
166 |
aaaatcgaagattcaatggagagtttttatttgatcgatatcatccaaaggtttggcattgaacacta |
233 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
3257 |
aaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacacta |
3324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 3157 - 3268
Alignment:
| Q |
66 |
tttatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgtt |
165 |
Q |
| |
|
|||||||||| || |||||||||||||||||| || ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3157 |
tttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgtt |
3256 |
T |
|
| Q |
166 |
aaaatcgaagat |
177 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3257 |
aaaatcgaagat |
3268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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