View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_low_16 (Length: 269)
Name: NF6845_low_16
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 10562925 - 10562681
Alignment:
| Q |
10 |
ctaatatgtgtgtgaaaatcacttattaaaataaactagaaggagaaaaacttgagagaggtgatttaaggtgaaaaa-taacgaccataaatcactcat |
108 |
Q |
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| T |
10562925 |
ctaagatgtgtgtgaaaatcacttattaaaataaactagaaggagaaaaacttgagagaggtgatttgaggtgaaaaaataacgaccataaatcactcat |
10562826 |
T |
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| Q |
109 |
ctgtcgtggatgaatgagaaaaaactagggtttaggaaattcgtgcatataggattgcaattccatgtcattcttattcacctcatccttcttaattggt |
208 |
Q |
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| T |
10562825 |
atatcgtggatgaatgagaaaaaattagggtttaggaaattcgtgcatataggattgcaattccatgtcattcttattcacctcatccttcttaattggt |
10562726 |
T |
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| Q |
209 |
ggtggcaatgtcatcactatagcttcatcatgatctactttgttg |
253 |
Q |
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| T |
10562725 |
ggtggcaatgtcatcactatagcttcatcatgatctactttgttg |
10562681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 45937285 - 45937243
Alignment:
| Q |
197 |
ttcttaattggtggtggcaatgtcatcactatagcttcatcat |
239 |
Q |
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| T |
45937285 |
ttcttaattgatggtggcaatggcatcactatagcttcatcat |
45937243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 3673701 - 3673580
Alignment:
| Q |
20 |
tgtgaaaatcacttattaaaataaactagaaggagaaaaac--ttgagagaggtgatttaaggtgaaaaataacgaccataaatcactcatctgtcgtgg |
117 |
Q |
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| T |
3673701 |
tgtgaaaatcacttatttaaataaaaaggaaggagaaaaacgatttagaggggtgatttggggtcaaaaat--tgaccctaaatcacccctctttggtgg |
3673604 |
T |
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| Q |
118 |
atgaatgagaaaaaactagggttt |
141 |
Q |
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| T |
3673603 |
ataaatgagaagaaagtagggttt |
3673580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 8957289 - 8957249
Alignment:
| Q |
20 |
tgtgaaaatcacttattaaaataaactagaaggagaaaaac |
60 |
Q |
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| T |
8957289 |
tgtgaaaatcacttatttaaataaaaaagaaggagaaaaac |
8957249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 14741428 - 14741472
Alignment:
| Q |
98 |
aaatcactcatctgtcgtggatgaatgagaaaaaactagggttta |
142 |
Q |
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| T |
14741428 |
aaatcactcatctttgatggatgaaggagaaaaaactagggttta |
14741472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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