View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6845_low_17 (Length: 268)

Name: NF6845_low_17
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6845_low_17
NF6845_low_17
[»] chr5 (7 HSPs)
chr5 (130-256)||(10290210-10290336)
chr5 (20-123)||(10290052-10290155)
chr5 (189-256)||(10298669-10298736)
chr5 (130-246)||(9747055-9747171)
chr5 (17-111)||(9747370-9747461)
chr5 (130-188)||(10298467-10298525)
chr5 (17-120)||(10298170-10298270)
[»] chr8 (1 HSPs)
chr8 (17-111)||(37743885-37743978)
[»] chr2 (2 HSPs)
chr2 (17-111)||(34694426-34694519)
chr2 (17-111)||(34716838-34716931)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 10290210 - 10290336
Alignment:
Q  130 aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290210 aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca 10290309  T
Q  230 taagaactgttggaccattttgatgtc 256  Q
    |||||||||||||| ||||||||||||    
T  10290310 taagaactgttggagcattttgatgtc 10290336  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 10290052 - 10290155
Alignment:
Q  20 gtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290052 gtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaat 10290151  T
Q  120 agta 123  Q
    ||||    
T  10290152 agta 10290155  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 10298669 - 10298736
Alignment:
Q  189 ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10298669 ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtc 10298736  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 9747171 - 9747055
Alignment:
Q  130 aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca 229  Q
    ||||| ||||||||||||||| |||||||  ||   || |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||    
T  9747171 aataagtatgaacgaattcttctgcagaaatgagggttgaaaaggaatgagtaatggagggagtatgatgaacttacatgtctctcaccaccgtcgttca 9747072  T
Q  230 taagaactgttggacca 246  Q
     ||| ||||||||||||    
T  9747071 caaggactgttggacca 9747055  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 9747461 - 9747370
Alignment:
Q  17 tcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||   |||||||||   ||||| |||||||||||||||| |||||| ||||||    
T  9747461 tcagtgtagttctcctaaagagcatatagcagaaaatcaaatgattttttatacaa---ctctgaatgaaatataaaggtcgtcatgggcaacag 9747370  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 10298467 - 10298525
Alignment:
Q  130 aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggag 188  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  10298467 aataaatatgaaagaattcttctgcagaagcgacacttaaaaaggaatgaggattggag 10298525  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 10298170 - 10298270
Alignment:
Q  17 tcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaa 116  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||   ||||||||||   | |||  |||||| |||||||||||| ||||||||| |||    
T  10298170 tcagtgtagttctccaaaagagcatatagcagaaaatcaaatgattttttatacaac---tttgttcgaaataaaaaggtcatcatagtcaacaggtaaa 10298266  T
Q  117 aata 120  Q
    ||||    
T  10298267 aata 10298270  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 37743978 - 37743885
Alignment:
Q  17 tcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag 111  Q
    |||||||||||||||||||||||||  |||||||||||||||||   ||| |   ||| ||||| ||||||||| ||||||||||||||||||||    
T  37743978 tcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacag 37743885  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 34694426 - 34694519
Alignment:
Q  17 tcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag 111  Q
    |||||||||||||||||||||||||  |||||||||||||||||   ||| |   ||| ||||| ||||||||| ||||||||||||||||||||    
T  34694426 tcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacag 34694519  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 34716838 - 34716931
Alignment:
Q  17 tcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag 111  Q
    |||||||||||||||||||||||||  |||||||||||||||||   ||| |   ||| ||||| ||||||||| ||||||||||||||||||||    
T  34716838 tcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacag 34716931  T

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