View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_low_18 (Length: 264)
Name: NF6845_low_18
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 8755995 - 8756245
Alignment:
| Q |
14 |
aacaaatcgagttgatattgaattgatccaacatcaaatgggtgacatagtgaaacaaatattagcaaaaccgatccaactagcagaccaagtaacaaaa |
113 |
Q |
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| T |
8755995 |
aacaaatcgagttgatattgaattgatccaacatcaaatgggtgacatagtgaaacaaatattagcaaaaccgatccaactagcagaccaagtaacaaaa |
8756094 |
T |
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| Q |
114 |
tcagcagatgaagcaagttcattcaaacaagaatgttctgagctcaaatccaaaacagaaaaactcgctactcttctccgtcaagcagcaagagcgagct |
213 |
Q |
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| T |
8756095 |
gcagcagatgaagcaagttcattcaaacaagaatgttctgagctcaaatccaaaacagaaaaactcgctactcttctccgtcaagcagcaagagcgagct |
8756194 |
T |
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| Q |
214 |
ctgatctctacgaacgtccaacaaaacggatcatcgaagaaacagaacaag |
264 |
Q |
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| T |
8756195 |
ctgatctctacgaacgtccaacaaaacggatcatcgaagaaacagaacaag |
8756245 |
T |
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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 32032367 - 32032192
Alignment:
| Q |
57 |
gacatagtgaaacaaatattagcaaaaccgatccaactagcagaccaagtaacaaaatcagcagatgaagcaagttca---ttcaaacaagaatgttctg |
153 |
Q |
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|||||||| |||||| | |||||||||||||||||||||||||||||||||| ||| |||| || |||| ||| ||| ||||||||||||||| | |
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| T |
32032367 |
gacatagttaaacaattgttagcaaaaccgatccaactagcagaccaagtaagcaaagcagctgaagaaggaagctcatctttcaaacaagaatgtctag |
32032268 |
T |
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| Q |
154 |
agctcaaatccaaaacagaaaaactcgctactcttctccgtcaagcagcaagagcgagctctgatctctacgaacg |
229 |
Q |
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| T |
32032267 |
acctcaaatcaaaaaccgaaaaactcgcttctcttctccgacaagctgcaagatcaagctccgatttatacgaacg |
32032192 |
T |
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