View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_low_2 (Length: 708)
Name: NF6845_low_2
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 4 - 689
Target Start/End: Original strand, 14332103 - 14332790
Alignment:
| Q |
4 |
gatggacatcacaaatacaaggtcagtgactatagagtacacacacatatgttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataagg |
102 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |
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| T |
14332103 |
gatggatatcacaaatacaaggtcagtgactatagagtatacacacatatgttattagcacatgcttgagctgcaatgttgtataagaaaaaatataagg |
14332202 |
T |
|
| Q |
103 |
taaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttttcattttaaatcataatcaagaagggtaacatatagtatgttcaagaa |
202 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14332203 |
taaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttttcattttaaaccataatcaagaagggtaacatatagtatgttcaagaa |
14332302 |
T |
|
| Q |
203 |
gcaatctttctaaagtacaggtcatgcaacatggtat-attgggcttaatcttcttacttttggttttgttccactgacaaatactagtgaagatataat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
14332303 |
gcaatctttctaaagtacaggtcatgcaacatggcattattgggcttaatcttcttacttttggttttgttccactgacaaatactagtaaagatatagt |
14332402 |
T |
|
| Q |
302 |
tgcaactcaaatggcccaagacttcatgatggggtggtaggtaatgatttgatcatgttatctttcttttcgatgtttgtagacattgctaacctttgaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14332403 |
tgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttgatcatgttatctttcttttcaatgtttgtagacattgctaacctttgaa |
14332502 |
T |
|
| Q |
402 |
attatcggattgcataggattaacctttgcattatcnnnnnnnncatatggtttttatatctctaacaagtgcctacaaataaggttcctttgagcttaa |
501 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14332503 |
attatgggattgcataggactaacctttgcattatctttctttgcatatggtttttatatctctaacaagtgcctacaaataaggttcctttgagcttaa |
14332602 |
T |
|
| Q |
502 |
actaagacaacactcacatcattttactttgtaacatataaaattatagaaaacatgttgctttgtcacaactttcaattatacattaattgctacgagt |
601 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14332603 |
actaagacaacattcacatcattttactttgtaacatataaaattatagaaaacatgttgctttgtcacaactttcaattatacattaattgctacgagt |
14332702 |
T |
|
| Q |
602 |
atacgttgtttatattgcagggttctaaatccattaacatttggtgattatccttatataatgaaaaagaatgttggatcaaggcttc |
689 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14332703 |
atacgttgtttatattgcagggttctaaatccattaacatttggtgattatccttatataatgaaaaagaatgttggatcaaggcttc |
14332790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 4 - 689
Target Start/End: Original strand, 9989070 - 9989769
Alignment:
| Q |
4 |
gatggacatcacaaatacaaggtcagtgactatagagtacacacacatatgttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataagg |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
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|
| T |
9989070 |
gatggatatcacaaatacaaggtcagtgactatagagtacacacacatatgttattagcacatgcttcagctgcaacgttgtataagaaaaaatataagg |
9989169 |
T |
|
| Q |
103 |
taaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttttcattttaaatcataatcaagaagggtaacatatagtatgttcaagaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
9989170 |
taaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttttcattttaaaccataatcaagaagggtaacatatagtatgttcaagaa |
9989269 |
T |
|
| Q |
203 |
gcaatctttctaaagtacaggtcatgcaacatggta-tattgggcttaatcttcttacttttggttttgttccactgacaaatact------------ag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
9989270 |
gcaatctttctaaagtacaggtcatgcaacatggcattattgagcttaatcttcttacttttggttttgttccactgacaaatactagtaaagatataag |
9989369 |
T |
|
| Q |
290 |
tgaagatataattgcaactcaaatggcccaagacttcatgatggggtggtaggtaatgatttgatcatgttatctttcttttcgatgtttgtagacattg |
389 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
9989370 |
taaagatataattgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttaatcatgttatctttcttttcaatgtttgtagacattg |
9989469 |
T |
|
| Q |
390 |
ctaacctttgaaattatcggattgcataggattaacctttgcattatcnnnnnnnncatatggtttttatatctctaacaagtgcctacaaataaggttc |
489 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
9989470 |
ctaacctttgaaattatgggattgcataggactaacctttgcattatctttctttgcatatggttttcatatctctaacaagtgcctacaaataaggttc |
9989569 |
T |
|
| Q |
490 |
ctttgagcttaaactaagacaacactcacatcattttactttgtaacatataaaattatagaaaacatgttgctttgtcacaactttcaattatacatta |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9989570 |
ctttgagcttaaactaagacaacactcacatcattttactttgtaacatataaaattataaaaaacatgttgctttgtcacaactttcaattatacatta |
9989669 |
T |
|
| Q |
590 |
attgctacgagtatacgttgtttatattgcagggttctaaatccattaacatttggtgattatccttatataatgaaaaagaatgttggatcaaggcttc |
689 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
9989670 |
attgctacgggtatacattgtttatattgcagggttctaaatccataaacatttggtgattttccttatataatgaaaaagaatgttggatcaaggcttc |
9989769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 191 - 425
Target Start/End: Complemental strand, 25327872 - 25327638
Alignment:
| Q |
191 |
tatgttcaagaagcaatctttctaaagtacaggtcatgcaacatgg-tatattgggcttaatcttcttacttttggttttgttccactgacaaatactag |
289 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25327872 |
tatgttcatgaagaaatctttctaaagtgcagggcatgcaacatggatttattgggtttaatcttcttacttttggttttgttccactaacaaatactag |
25327773 |
T |
|
| Q |
290 |
tgaagatataattgcaactcaaatggcccaagacttcatgatggggtggtaggtaatgatttgatcatgttatctttcttttcgatgtttgtagacattg |
389 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||| ||||||| |
|
|
| T |
25327772 |
tgaagatatagttgccactcaaagggcccaagacttcatgatggggtggtaagtaatgatttgatcctgttatcttccttttcaatgtttgcagacattt |
25327673 |
T |
|
| Q |
390 |
ctaacctttgaaattatcggattgcataggattaac |
425 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||| |||| |
|
|
| T |
25327672 |
ctaaactttg-cattatgggattgcataggactaac |
25327638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 225 - 346
Target Start/End: Complemental strand, 25322005 - 25321883
Alignment:
| Q |
225 |
catgcaacatgg-tatattgggcttaatcttcttacttttggttttgttccactgacaaatactagtgaagatataattgcaactcaaatggcccaagac |
323 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
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|
| T |
25322005 |
catgcaacatggatttattgggtttaatcttcttacttttggatttgttccactgacaaatactagtgaagatataattgccactcaaagggtccaagac |
25321906 |
T |
|
| Q |
324 |
ttcatgatggggtggtaggtaat |
346 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
25321905 |
ttcatgatggggtggtaagtaat |
25321883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 614 - 689
Target Start/End: Complemental strand, 25327432 - 25327357
Alignment:
| Q |
614 |
tattgcagggttctaaatccattaacatttggtgattatccttatataatgaaaaagaatgttggatcaaggcttc |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
25327432 |
tattgcagggttctaaatccattaacatttggtgattatcctgatataatgaaaaagaatgctggatcaaggcttc |
25327357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 25328013 - 25327921
Alignment:
| Q |
49 |
catatgttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataaggta-aatttatgtagaaaatgcaccacttcacttacaat |
139 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||||| ||| ||| |||||||| || |||||||||| ||||||||||| ||||||||| |
|
|
| T |
25328013 |
catatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgtagaacatgcaccactttacttacaat |
25327921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 561
Target Start/End: Complemental strand, 25327606 - 25327544
Alignment:
| Q |
501 |
aactaagacaacactca---catcattttactttgtaacatataaaattatagaaaacatgttg |
561 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
25327606 |
aactaagacaacactcaaatcatcattttactt-gtaacagataaaattatagaaaacatgttg |
25327544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 639 - 689
Target Start/End: Original strand, 21725790 - 21725840
Alignment:
| Q |
639 |
catttggtgattatccttatataatgaaaaagaatgttggatcaaggcttc |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21725790 |
catttggtgattatccttatataatgaaaaagaatgttggatcaaggcttc |
21725840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 639 - 689
Target Start/End: Original strand, 21805515 - 21805565
Alignment:
| Q |
639 |
catttggtgattatccttatataatgaaaaagaatgttggatcaaggcttc |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21805515 |
catttggtgattatccttatataatgaaaaagaatgttggatcaaggcttc |
21805565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 5218556 - 5218491
Alignment:
| Q |
239 |
tattgggcttaatcttcttacttttggttttgttccactgacaaatactagtgaagatataattgc |
304 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5218556 |
tattgggtttaatctccttgtttttggttttgttccactaacaaatactagtgaagacataattgc |
5218491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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