View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6845_low_20 (Length: 235)

Name: NF6845_low_20
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6845_low_20
NF6845_low_20
[»] chr5 (1 HSPs)
chr5 (50-235)||(6228237-6228433)
[»] chr2 (3 HSPs)
chr2 (108-160)||(17980740-17980792)
chr2 (120-161)||(17984562-17984603)
chr2 (51-95)||(16568230-16568274)
[»] scaffold0009 (1 HSPs)
scaffold0009 (50-93)||(53670-53713)
[»] chr4 (3 HSPs)
chr4 (50-96)||(49574861-49574907)
chr4 (48-93)||(29306338-29306383)
chr4 (50-96)||(376190-376236)
[»] chr1 (3 HSPs)
chr1 (120-161)||(25380599-25380640)
chr1 (117-160)||(24592133-24592176)
chr1 (117-159)||(13332550-13332592)
[»] chr7 (4 HSPs)
chr7 (117-161)||(12153289-12153333)
chr7 (59-93)||(496908-496942)
chr7 (56-93)||(33744215-33744252)
chr7 (117-161)||(19019142-19019186)
[»] chr3 (2 HSPs)
chr3 (50-93)||(49758448-49758491)
chr3 (47-96)||(21078634-21078683)
[»] scaffold0830 (1 HSPs)
scaffold0830 (50-95)||(684-729)
[»] chr8 (1 HSPs)
chr8 (50-86)||(19341828-19341864)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 50 - 235
Target Start/End: Complemental strand, 6228433 - 6228237
Alignment:
Q  50 ttatagaaaaatttattttaagatataattgaaataatgaaaaaatacaacctaaaatcacattaaccacatttgaattcaatcaagtgtcaatttatca 149  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  6228433 ttatagaaaaatttgtttgaggatataattgaaataatgaaaaaatacgacctaaaatcatattaaccacatttgaattcaatctagtgtcaatttatca 6228334  T
Q  150 aacaca--------tataccataacataaatctattatc---ccatagacacacttactaactagcagccgacatcaactaataaataatgatgact 235  Q
    ||||||        |||||||||||||||||||||||||   ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  6228333 aacacatatagtcatataccataacataaatctattatctatccatagacacatttactaactagcaaccgacatcaactaataaataatgatgact 6228237  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 17980740 - 17980792
Alignment:
Q  108 cacattaaccacatttgaattcaatcaagtgtcaatttatcaaacacatatac 160  Q
    |||||| | ||||||||||||||||  ||||||||||||||||||||||||||    
T  17980740 cacattgatcacatttgaattcaattgagtgtcaatttatcaaacacatatac 17980792  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 17984562 - 17984603
Alignment:
Q  120 atttgaattcaatcaagtgtcaatttatcaaacacatatacc 161  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  17984562 atttgaattcaatctagtgtcaatatatcaaacacatatacc 17984603  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 16568274 - 16568230
Alignment:
Q  51 tatagaaaaatttattttaagatataattgaaataatgaaaaaat 95  Q
    ||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  16568274 tatagaaaaatttatttaaaggtataattaaaataataaaaaaat 16568230  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 53713 - 53670
Alignment:
Q  50 ttatagaaaaatttattttaagatataattgaaataatgaaaaa 93  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  53713 ttatagaaaaatttgtttaaagatataattgaaataatgaaaaa 53670  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 49574907 - 49574861
Alignment:
Q  50 ttatagaaaaatttattttaagatataattgaaataatgaaaaaata 96  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  49574907 ttatagaaaaatttgtttaaagatataattgaaacaatgaaaaaata 49574861  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 29306338 - 29306383
Alignment:
Q  48 ttttatagaaaaatttattttaagatataattgaaataatgaaaaa 93  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||    
T  29306338 ttttatagaaaaatttgttcaaagatataattgaaataatgaaaaa 29306383  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 376236 - 376190
Alignment:
Q  50 ttatagaaaaatttattttaagatataattgaaataatgaaaaaata 96  Q
    ||||||||||| |||||| ||||||||||||  ||||||||||||||    
T  376236 ttatagaaaaaattatttaaagatataattgggataatgaaaaaata 376190  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 25380599 - 25380640
Alignment:
Q  120 atttgaattcaatcaagtgtcaatttatcaaacacatatacc 161  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  25380599 atttgaattcaatccaatgtcaatttatcaaacacatatacc 25380640  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 24592176 - 24592133
Alignment:
Q  117 cacatttgaattcaatcaagtgtcaatttatcaaacacatatac 160  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||    
T  24592176 cacatttggattcaatctagtgttaatttatcaaacacatatac 24592133  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 13332592 - 13332550
Alignment:
Q  117 cacatttgaattcaatcaagtgtcaatttatcaaacacatata 159  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||    
T  13332592 cacatttaaattcaatcaagtctcaattcatcaaacacatata 13332550  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 12153333 - 12153289
Alignment:
Q  117 cacatttgaattcaatcaagtgtcaatttatcaaacacatatacc 161  Q
    |||||||||||| |||| | |||||||||||||||||||||||||    
T  12153333 cacatttgaatttaatctattgtcaatttatcaaacacatatacc 12153289  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 496942 - 496908
Alignment:
Q  59 aatttattttaagatataattgaaataatgaaaaa 93  Q
    ||||||||| |||||||||||||||||||||||||    
T  496942 aatttatttaaagatataattgaaataatgaaaaa 496908  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 33744252 - 33744215
Alignment:
Q  56 aaaaatttattttaagatataattgaaataatgaaaaa 93  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  33744252 aaaaatttatttaaagatataattgcaataatgaaaaa 33744215  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 19019142 - 19019186
Alignment:
Q  117 cacatttgaattcaatcaagtgtcaatttatcaaacacatatacc 161  Q
    |||||||| |||||||| |||||||||||| ||||||| ||||||    
T  19019142 cacatttggattcaatctagtgtcaatttaccaaacacctatacc 19019186  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 49758448 - 49758491
Alignment:
Q  50 ttatagaaaaatttattttaagatataattgaaataatgaaaaa 93  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||    
T  49758448 ttatagaaaaatttgtttaaaggtataattgaaataatgaaaaa 49758491  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 21078683 - 21078634
Alignment:
Q  47 tttttatagaaaaatttattttaagatataattgaaataatgaaaaaata 96  Q
    |||||||||||||| || ||| | | ||||||||||||||||||||||||    
T  21078683 tttttatagaaaaagttgtttaagggtataattgaaataatgaaaaaata 21078634  T

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Target: scaffold0830 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 729 - 684
Alignment:
Q  50 ttatagaaaaatttattttaagatataattgaaataatgaaaaaat 95  Q
    ||||||||||| | |||| ||||||||||||| |||||||||||||    
T  729 ttatagaaaaaataatttaaagatataattgagataatgaaaaaat 684  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 19341864 - 19341828
Alignment:
Q  50 ttatagaaaaatttattttaagatataattgaaataa 86  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  19341864 ttatagaaaaaattatttaaagatataattgaaataa 19341828  T

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