View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6845_low_5 (Length: 473)
Name: NF6845_low_5
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 24 - 464
Target Start/End: Original strand, 15446221 - 15446662
Alignment:
| Q |
24 |
tcaaattgttagaaattattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaatcattatcaaccaaccatgcaacttcagaatt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15446221 |
tcaaattgttagaaattattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattatcaaccaaccatgcaacttcagaatt |
15446320 |
T |
|
| Q |
124 |
taacaacacatttgacatgttccaaggcatgttattgtggtataaagaaagaaacaaacaatgagatgccaaactccaaaacatgtcctgagatacatct |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
15446321 |
taacaacacatttgacatgttccaaggcatgttattgtggtataaagaaagaaaccaacaatgagatgccaaactccaaaacttgtcttgagatacatct |
15446420 |
T |
|
| Q |
224 |
ttaaacttggagttttcaattgttaggctagtgagcgatgtttgtgtgtacaaccatggaataagtttaagatctgcatactccaagacgagggttagaa |
323 |
Q |
| |
|
|||||| ||||||||||||||||||| | | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || |||| |
|
|
| T |
15446421 |
ttaaacatggagttttcaattgttagaccaatgagcattgtttgtgtgtacaaccatgggataagtttaagatctgcatactccaagatgagagtaagaa |
15446520 |
T |
|
| Q |
324 |
gttcaaaaggaggagtccaacgaggatcaaaatcaaagatgaagaatggtgaactcaaaaacaaacgttttaaattgaagagattagcaaaatttc-gat |
422 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| || | ||||||| |||||||||| |||||||||| |||||||||||||||| || ||| |
|
|
| T |
15446521 |
gttcaaaaggaggagtccaactgggatcaaactcaaagatggaggacggtgaacccaaaaacaaatgttttaaattaaagagattagcaaaatgtctgat |
15446620 |
T |
|
| Q |
423 |
gggtcacaactccagagagtgaattttctccaacacccaata |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15446621 |
gggtcacaactccagagagtgaattttctccaacacccaata |
15446662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 44 - 435
Target Start/End: Original strand, 15313359 - 15313750
Alignment:
| Q |
44 |
ttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaatcattatcaaccaaccatgcaacttcagaatttaacaacacatttgacatgt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
15313359 |
ttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattatcaatcaaccatgtaactttagaatttaacaacacatttgacatgt |
15313458 |
T |
|
| Q |
144 |
tccaaggcatgttattgtggtataaagaaagaaacaaacaatgagatgccaaactccaaaacatgtcctgagatacatctttaaacttggagttttcaat |
243 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15313459 |
tccaaggcatgttattgtggaataaagaaagaaacaaacaatgagatgccaaactccaaaacttgtcctgagatacatctttaaacgtggagttttcaat |
15313558 |
T |
|
| Q |
244 |
tgttaggctagtgagcgatgtttgtgtgtacaaccatggaataagtttaagatctgcatactccaagacgagggttagaagttcaaaaggaggagtccaa |
343 |
Q |
| |
|
| ||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||| ||| | || | |||||| |||||||||| |||| |
|
|
| T |
15313559 |
ttttaaagtagtgagagatgtttgtgtgtacaaccatgggataagtttaagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccat |
15313658 |
T |
|
| Q |
344 |
cgaggatcaaaatcaaagatgaagaatggtgaactcaaaaacaaacgttttaaattgaagagattagcaaaatttcgatgggtcacaactcc |
435 |
Q |
| |
|
|||||||||||| |||||| | || ||||||| || |||| |||||||||||| || || ||||||||||||| ||||||||||| |
|
|
| T |
15313659 |
tgaggatcaaaattgaagatggataagggtgaaccaaaccacaactcttttaaattgaaaagtttgtcaaaatttcgatgcgtcacaactcc |
15313750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 44 - 435
Target Start/End: Original strand, 15493728 - 15494119
Alignment:
| Q |
44 |
ttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaatcattatcaaccaaccatgcaacttcagaatttaacaacacatttgacatgt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
15493728 |
ttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattatcaatcaaccatgtaactttagaatttaacaacacatttgacatgt |
15493827 |
T |
|
| Q |
144 |
tccaaggcatgttattgtggtataaagaaagaaacaaacaatgagatgccaaactccaaaacatgtcctgagatacatctttaaacttggagttttcaat |
243 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15493828 |
tccaaggcatgttattgtggaataaagaaagaaacaaacaatgagatgccaaactccaaaacttgtcctgagatacatctttaaacgtggagttttcaat |
15493927 |
T |
|
| Q |
244 |
tgttaggctagtgagcgatgtttgtgtgtacaaccatggaataagtttaagatctgcatactccaagacgagggttagaagttcaaaaggaggagtccaa |
343 |
Q |
| |
|
| ||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||| ||| | || | |||||| |||||||||| |||| |
|
|
| T |
15493928 |
ttttaaagtagtgagagatgtttgtgtgtacaaccatgggataagtttaagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccat |
15494027 |
T |
|
| Q |
344 |
cgaggatcaaaatcaaagatgaagaatggtgaactcaaaaacaaacgttttaaattgaagagattagcaaaatttcgatgggtcacaactcc |
435 |
Q |
| |
|
|||||||||||| |||||| | || ||||||| || |||| |||||||||||| || || ||||||||||||| ||||||||||| |
|
|
| T |
15494028 |
tgaggatcaaaattgaagatggataagggtgaaccaaaccacaactcttttaaattgaaaagtttgtcaaaatttcgatgcgtcacaactcc |
15494119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 47 - 303
Target Start/End: Original strand, 15302497 - 15302753
Alignment:
| Q |
47 |
aaaacactcacatttgaagttaattgaggaaggccaccactcaaatcattatcaaccaaccatgcaacttcagaatttaacaacacatttgacatgttcc |
146 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| | || ||| || |||| ||| |||||| || | |||||||||||||||||||| |
|
|
| T |
15302497 |
aaaacactcacatttgaagttagtcgaggaaggccaccactcaaaccgtttccaatcagccatacaatttcagagttcagcaacacatttgacatgttcc |
15302596 |
T |
|
| Q |
147 |
aaggcatgttattgtggtataaagaaagaaacaaacaatgagatgccaaactccaaaacatgtcctgagatacatctttaaacttggagttttcaattgt |
246 |
Q |
| |
|
||||||||| ||| | | |||| ||||||| | |||||| ||||||||||||||||||||||| || ||||||| ||||||| |||||| | ||| |
|
|
| T |
15302597 |
aaggcatgtcattattctctaaaaaaagaaatacacaatgtgatgccaaactccaaaacatgtcttgtgatacatttttaaacaaggagttgtatatttc |
15302696 |
T |
|
| Q |
247 |
taggctagtgagcgatgtttgtgtgtacaaccatggaataagtttaagatctgcata |
303 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
15302697 |
aattttggtgagagatgtttgtgtgtacaaccatggaagaagtttaagatcggcata |
15302753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 47 - 303
Target Start/End: Original strand, 15482866 - 15483122
Alignment:
| Q |
47 |
aaaacactcacatttgaagttaattgaggaaggccaccactcaaatcattatcaaccaaccatgcaacttcagaatttaacaacacatttgacatgttcc |
146 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| | || ||| || |||| ||| |||||| || | |||||||||||||||||||| |
|
|
| T |
15482866 |
aaaacactcacatttgaagttagtcgaggaaggccaccactcaaaccgtttccaatcagccatacaatttcagagttcagcaacacatttgacatgttcc |
15482965 |
T |
|
| Q |
147 |
aaggcatgttattgtggtataaagaaagaaacaaacaatgagatgccaaactccaaaacatgtcctgagatacatctttaaacttggagttttcaattgt |
246 |
Q |
| |
|
||||||||| ||| | | |||| ||||||| | |||||| ||||||||||||||||||||||| || ||||||| ||||||| |||||| | ||| |
|
|
| T |
15482966 |
aaggcatgtcattattctctaaaaaaagaaatacacaatgtgatgccaaactccaaaacatgtcttgtgatacatttttaaacaaggagttgtatatttc |
15483065 |
T |
|
| Q |
247 |
taggctagtgagcgatgtttgtgtgtacaaccatggaataagtttaagatctgcata |
303 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
15483066 |
aattttggtgagagatgtttgtgtgtacaaccatggaagaagtttaagatcggcata |
15483122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 55 - 377
Target Start/End: Original strand, 15297747 - 15298069
Alignment:
| Q |
55 |
cacatttgaagttaattgaggaaggccaccactcaaatcattatcaaccaaccatgcaacttcagaatttaacaacacatttgacatgttccaaggcatg |
154 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||| ||||| |||||| |||| ||| |||||| || |||||||||||| ||||||||||| ||||| |
|
|
| T |
15297747 |
cacatttgaagttaatcgaggaaggctaccacttaaaccattaacaaccagccatacaatttcagagttcaacaacacatttcacatgttccaatgcatg |
15297846 |
T |
|
| Q |
155 |
ttattgtggtataaagaaagaaacaaacaatgagatgccaaactccaaaacatgtcctgagatacatctttaaacttggagttttcaattgttaggctag |
254 |
Q |
| |
|
|||| | ||||||| ||||| | ||||| || | |||||||||||||| || ||||| || ||||||| |||| |||| ||| | |
|
|
| T |
15297847 |
gagttgttgaataaagagagaaatgagaaatgaaatacaaaactccaaaacatttctggagatgtatttttaaacgaggaggaggcaatatgtagagatg |
15297946 |
T |
|
| Q |
255 |
tgagcgatgtttgtgtgtacaaccatggaataagtttaagatctgcatactccaagacgagggttagaagttcaaaaggaggagtccaacgaggatcaaa |
354 |
Q |
| |
|
|||| | ||||||||| |||||||| | || ||||||||||| ||||||| ||| | || || |||||| |||||||||| |||| | |||||||| |
|
|
| T |
15297947 |
tgagagttgtttgtgtatacaaccacgaaacaagtttaagatatgcatacatcaaatcaagtatttgaagtttaaaaggaggaatccagtggggatcaaa |
15298046 |
T |
|
| Q |
355 |
atcaaagatgaagaatggtgaac |
377 |
Q |
| |
|
||||||||| ||| ||||||||| |
|
|
| T |
15298047 |
atcaaagataaaggatggtgaac |
15298069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 55 - 377
Target Start/End: Original strand, 15478116 - 15478438
Alignment:
| Q |
55 |
cacatttgaagttaattgaggaaggccaccactcaaatcattatcaaccaaccatgcaacttcagaatttaacaacacatttgacatgttccaaggcatg |
154 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||| ||||| |||||| |||| ||| |||||| || |||||||||||| ||||||||||| ||||| |
|
|
| T |
15478116 |
cacatttgaagttaatcgaggaaggctaccacttaaaccattaacaaccagccatacaatttcagagttcaacaacacatttcacatgttccaatgcatg |
15478215 |
T |
|
| Q |
155 |
ttattgtggtataaagaaagaaacaaacaatgagatgccaaactccaaaacatgtcctgagatacatctttaaacttggagttttcaattgttaggctag |
254 |
Q |
| |
|
|||| | ||||||| ||||| | ||||| || | |||||||||||||| || ||||| || ||||||| |||| |||| ||| | |
|
|
| T |
15478216 |
gagttgttgaataaagagagaaatgagaaatgaaatacaaaactccaaaacatttctggagatgtatttttaaacgaggaggaggcaatatgtagagatg |
15478315 |
T |
|
| Q |
255 |
tgagcgatgtttgtgtgtacaaccatggaataagtttaagatctgcatactccaagacgagggttagaagttcaaaaggaggagtccaacgaggatcaaa |
354 |
Q |
| |
|
|||| | ||||||||| |||||||| | || ||||||||||| ||||||| ||| | || || |||||| |||||||||| |||| | |||||||| |
|
|
| T |
15478316 |
tgagagttgtttgtgtatacaaccacgaaacaagtttaagatatgcatacatcaaatcaagtatttgaagtttaaaaggaggaatccagtggggatcaaa |
15478415 |
T |
|
| Q |
355 |
atcaaagatgaagaatggtgaac |
377 |
Q |
| |
|
||||||||| ||| ||||||||| |
|
|
| T |
15478416 |
atcaaagataaaggatggtgaac |
15478438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 15283994 - 15284089
Alignment:
| Q |
47 |
aaaacactcacatttgaagttaattgaggaaggccaccactcaaatcattatcaaccaaccatgcaacttcagaatttaacaacacatttgacatg |
142 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||| |||||||||| |||||| || |||||| ||| ||||| || |||||||||||||||||| |
|
|
| T |
15283994 |
aaaatactcacatttgtagttaatcgaggaaggctaccactcaaaccattatggactaaccatacaaaatcagagttcaacaacacatttgacatg |
15284089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 377
Target Start/End: Original strand, 15284197 - 15284312
Alignment:
| Q |
262 |
tgtttgtgtgtacaaccatggaataagtttaagatctgcatactccaagacgagggttagaagttcaaaaggaggagtccaacgaggatcaaaatcaaag |
361 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||| |||||||| || | || || |||||| |||||||||| ||||| | ||||||||||||||| |
|
|
| T |
15284197 |
tgtttgtgtataaaaccatggaacaagtttaagatttgcatactgtaaatcaagattttgaagtttaaaaggaggaatccaatggggatcaaaatcaaag |
15284296 |
T |
|
| Q |
362 |
atgaagaatggtgaac |
377 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
15284297 |
ataaaggatggtgaac |
15284312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 15464363 - 15464458
Alignment:
| Q |
47 |
aaaacactcacatttgaagttaattgaggaaggccaccactcaaatcattatcaaccaaccatgcaacttcagaatttaacaacacatttgacatg |
142 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||| |||||||||| |||||| || |||||| ||| ||||| || |||||||||||||||||| |
|
|
| T |
15464363 |
aaaatactcacatttgtagttaatcgaggaaggctaccactcaaaccattatggactaaccatacaaaatcagagttcaacaacacatttgacatg |
15464458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 377
Target Start/End: Original strand, 15464566 - 15464681
Alignment:
| Q |
262 |
tgtttgtgtgtacaaccatggaataagtttaagatctgcatactccaagacgagggttagaagttcaaaaggaggagtccaacgaggatcaaaatcaaag |
361 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||| |||||||| || | || || |||||| |||||||||| ||||| | ||||||||||||||| |
|
|
| T |
15464566 |
tgtttgtgtataaaaccatggaacaagtttaagatttgcatactgtaaatcaagattttgaagtttaaaaggaggaatccaatggggatcaaaatcaaag |
15464665 |
T |
|
| Q |
362 |
atgaagaatggtgaac |
377 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
15464666 |
ataaaggatggtgaac |
15464681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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