View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6845_low_9 (Length: 356)
Name: NF6845_low_9
Description: NF6845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6845_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 32916075 - 32916332
Alignment:
| Q |
1 |
tggagttcagtggagaaacaaccatatccagctatgtattctagtgtatatggaggtatcatacttgatccagcaatgatggtaatcccaatagatgatc |
100 |
Q |
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| T |
32916075 |
tggagttcagtggagaaacaaccatatccagctatgtattctagtgtatatggaggtatcatacttgatccagcaatgatggtaatcccaatagatgatc |
32916174 |
T |
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| Q |
101 |
acatggtacatagaggccatggtgtgtttgatactgctattattttcgaagggtaatgctaatttatttgtttttcttattgtaacaaagcattattaaa |
200 |
Q |
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| T |
32916175 |
acatggtacatagaggccatggtgtgtttgatactgctattattttcgaagggtaatgctaatttatttgttttttttattgtaataaagcattattaaa |
32916274 |
T |
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| Q |
201 |
tcaagtgcttggcttgaagtggttaatgaactttagttaaggtcaaatctctcaggaa |
258 |
Q |
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| T |
32916275 |
tcaagtggatggcttgaagtggttaatgaactttagttaaggtcgaatctctcaggaa |
32916332 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 8817624 - 8817581
Alignment:
| Q |
94 |
gatgatcacatggtacatagaggccatggtgtgtttgatactgc |
137 |
Q |
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| T |
8817624 |
gatgaccacatggtccatagaggccatggtgtctttgatactgc |
8817581 |
T |
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