View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6846_high_1 (Length: 412)
Name: NF6846_high_1
Description: NF6846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6846_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 5317941 - 5317539
Alignment:
| Q |
1 |
taatgaggaacacaagccacaccaattcataacgggtgtggtaatgnnnnnnnnn---cttaccaaaaattacaagaaacggataaccatttaaggggac |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5317941 |
taatgaggaacacaagccacaccaattcataacgggtgtggtaattttttttttttttcttaccaaaaattacaagaaacggataaccatttaaggggac |
5317842 |
T |
|
| Q |
98 |
actatgctcttattttatgaaggtccacgtccaatggtagaaaaagcaaaattttattaaccagatgtacacaaccaaaataaattagatattaaatgtc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5317841 |
actatgctcttattttatgaaggtccacgtccaatggtagaaaaagcaaaatgttattaaccagatgtacacaaccaaaataaattagatattaaatgtc |
5317742 |
T |
|
| Q |
198 |
ccagagtctatccctctggctccttttgatcaaattgaggaagaaacgaggaacaatcttcttaagtctcctaaggagtgaaaccacacatcctttcata |
297 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5317741 |
ccagagtctatctctctggctccttttgatcaaattgaggaagaaacgaggaacaatcttcttaagtctcctaaggagtgaaaccacacatcctttcata |
5317642 |
T |
|
| Q |
298 |
gcaacgtataaagggaactgcatcattgcaaatatgctgacagggaagaatgctgcagtataagtcaagcttgaagtccatttgttcttatctaacttga |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5317641 |
gcaacgtataaagggaactgcatcattgcaaatatgctgacagggaagaatgctgcagtataagtcaagcttgaagtccatttgttcttatctaacttga |
5317542 |
T |
|
| Q |
398 |
tgt |
400 |
Q |
| |
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||| |
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| T |
5317541 |
tgt |
5317539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 400
Target Start/End: Original strand, 5327898 - 5328072
Alignment:
| Q |
217 |
ctccttttgatcaaattgaggaagaaacgaggaacaatcttcttaagtctcctaaggagtgaaaccacacatcctttcatagcaacgtataaagggaact |
316 |
Q |
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|||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||||| | | |||||||||||| ||||| ||||||| ||||| |
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| T |
5327898 |
ctccttttgatcaacttgagtaa---acgaggaacaatcttcttaaggctcctaaggagtgccataagacatcctttcatggcaacatataaagtgaact |
5327994 |
T |
|
| Q |
317 |
gcatcattgcaaatatgctgacagggaagaatgctgcagtataagtcaagcttgaagtccatttgttcttatctaacttgatgt |
400 |
Q |
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||||||||||||| || ||||| ||||| ||||||||| |||||| ||||| |||||||| |||||||||||||||||| |
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| T |
5327995 |
gcatcattgcaaaaatactgacggggaaaaatgctgcactataag------ttgaactccatttgctcttatctaacttgatgt |
5328072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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