View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6846_low_1 (Length: 471)

Name: NF6846_low_1
Description: NF6846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6846_low_1
NF6846_low_1
[»] chr5 (16 HSPs)
chr5 (16-458)||(43312380-43312822)
chr5 (108-233)||(39486411-39486536)
chr5 (109-212)||(39454592-39454695)
chr5 (106-230)||(39480323-39480447)
chr5 (108-218)||(39450952-39451062)
chr5 (106-240)||(39458379-39458513)
chr5 (109-233)||(39464626-39464750)
chr5 (108-218)||(39475458-39475568)
chr5 (418-458)||(39483546-39483586)
chr5 (418-456)||(39486754-39486792)
chr5 (108-212)||(39471988-39472092)
chr5 (412-452)||(39475789-39475829)
chr5 (415-458)||(39458140-39458183)
chr5 (419-458)||(39464401-39464440)
chr5 (422-456)||(39451293-39451327)
chr5 (108-212)||(39460202-39460306)


Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 43312822 - 43312380
Alignment:
Q  16 gacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagnnnnnnnnagttgttgtttaggatgaaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  43312822 gacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagttttttttagttgttgtttaggatgaaga 43312723  T
Q  116 aactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtctccgtgt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43312722 aactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctccgtgt 43312623  T
Q  216 aaccgtcttggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaactactcat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43312622 aaccgtcttggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaaccactcat 43312523  T
Q  316 gttccctccacctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312522 gttccctccacctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcg 43312423  T
Q  416 ctgccttcgttgttgacatgttctgcaccaccatgattgatgt 458  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43312422 ctgccttcgttgttgacatgttctgcaccaccatgattgatgt 43312380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 39486411 - 39486536
Alignment:
Q  108 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 207  Q
    ||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| ||||| ||||||||  |||||||||||||||||    
T  39486411 gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgt 39486510  T
Q  208 ctccgtgtaaccgtcttggtcatcaa 233  Q
    |||||  ||||| |||||||||||||    
T  39486511 ctccgaataaccatcttggtcatcaa 39486536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 39454592 - 39454695
Alignment:
Q  109 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 208  Q
    |||||||||  |||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| || || |||||  ||||||||||||||||||    
T  39454592 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc 39454691  T
Q  209 tccg 212  Q
    ||||    
T  39454692 tccg 39454695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 39480323 - 39480447
Alignment:
Q  106 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 205  Q
    ||||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| || || ||||||||  |||||||||||||||    
T  39480323 aggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataacc 39480422  T
Q  206 gtctccgtgtaaccgtcttggtcat 230  Q
    |||||||  |||| || ||||||||    
T  39480423 gtctccgaataactgttttggtcat 39480447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 39450952 - 39451062
Alignment:
Q  108 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 207  Q
    ||||||||||  |||||||||||||||||||| ||| |||||| | ||| |||| ||||||||||| || || ||||||||  |||| ||||||||||||    
T  39450952 gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt 39451051  T
Q  208 ctccgtgtaac 218  Q
    ||||| |||||    
T  39451052 ctccgagtaac 39451062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 39458513 - 39458379
Alignment:
Q  106 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 205  Q
    ||||||||||||  |||||||||| ||||| |||| || ||||| || ||| |||| |||||||| || ||||| ||||||||  |||||||||||||||    
T  39458513 aggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataacc 39458414  T
Q  206 gtctccgtgtaaccgtcttggtcatcaagtttcca 240  Q
    |||||||  ||||  |||||||||| || ||||||    
T  39458413 gtctccgaataactatcttggtcatgaaatttcca 39458379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 39464750 - 39464626
Alignment:
Q  109 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 208  Q
    |||||||||  |||||| ||||||||||||| ||| | ||| || ||| |||| ||  ||||||||||||| ||||||||  ||||||||||||||||||    
T  39464750 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 39464651  T
Q  209 tccgtgtaaccgtcttggtcatcaa 233  Q
    ||||  ||||| |||| ||||||||    
T  39464650 tccgaataaccatcttagtcatcaa 39464626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 39475458 - 39475568
Alignment:
Q  108 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 207  Q
    ||||||||||  |||||||||||||||||||| ||| ||| || | ||| || | ||||| ||||||||||  ||||||||  |||| ||||||||||||    
T  39475458 gatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgt 39475557  T
Q  208 ctccgtgtaac 218  Q
    ||||| |||||    
T  39475558 ctccgagtaac 39475568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 39483546 - 39483586
Alignment:
Q  418 gccttcgttgttgacatgttctgcaccaccatgattgatgt 458  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39483546 gccttcgttgttgacatgttctgcaccaccatgattgatgt 39483586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 456
Target Start/End: Original strand, 39486754 - 39486792
Alignment:
Q  418 gccttcgttgttgacatgttctgcaccaccatgattgat 456  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39486754 gccttcgttgttgacatgttctgcaccaccatgattgat 39486792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 39471988 - 39472092
Alignment:
Q  108 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 207  Q
    ||||||||||  ||||||||||||| |||||| ||| | || ||| ||| |||| ||  | || |||||||| ||||||||  |||||||||||||||||    
T  39471988 gatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt 39472087  T
Q  208 ctccg 212  Q
    |||||    
T  39472088 ctccg 39472092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 39475789 - 39475829
Alignment:
Q  412 ctcgctgccttcgttgttgacatgttctgcaccaccatgat 452  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  39475789 ctcgccgccttcgttgttgacatgttctgcaccaccatgat 39475829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 39458183 - 39458140
Alignment:
Q  415 gctgccttcgttgttgacatgttctgcaccaccatgattgatgt 458  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  39458183 gctgcattcattgttgacatgttctgcaccaccatgattgatgt 39458140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 419 - 458
Target Start/End: Complemental strand, 39464440 - 39464401
Alignment:
Q  419 ccttcgttgttgacatgttctgcaccaccatgattgatgt 458  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  39464440 ccttcgttgttgacatgttctgcaccaacatgattgatgt 39464401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 456
Target Start/End: Original strand, 39451293 - 39451327
Alignment:
Q  422 tcgttgttgacatgttctgcaccaccatgattgat 456  Q
    |||||||||||||||||||||||||||||||||||    
T  39451293 tcgttgttgacatgttctgcaccaccatgattgat 39451327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 39460202 - 39460306
Alignment:
Q  108 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 207  Q
    ||||||||||  |||||| ||||||||||||| ||| |||  | | ||| |||  |||||||||||||| || ||||||||   |||||||||||| ||     
T  39460202 gatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgc 39460301  T
Q  208 ctccg 212  Q
    |||||    
T  39460302 ctccg 39460306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University