View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6846_low_10 (Length: 231)

Name: NF6846_low_10
Description: NF6846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6846_low_10
NF6846_low_10
[»] scaffold0083 (2 HSPs)
scaffold0083 (1-163)||(50805-50967)
scaffold0083 (194-231)||(50758-50795)
[»] chr5 (2 HSPs)
chr5 (5-162)||(26793328-26793486)
chr5 (5-139)||(26818844-26818979)
[»] chr3 (8 HSPs)
chr3 (5-162)||(10214745-10214903)
chr3 (5-162)||(10223486-10223644)
chr3 (5-161)||(10103809-10103966)
chr3 (36-151)||(10123641-10123755)
chr3 (36-151)||(10180295-10180409)
chr3 (36-151)||(10256410-10256524)
chr3 (99-151)||(10028802-10028854)
chr3 (120-231)||(11768325-11768441)


Alignment Details
Target: scaffold0083 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 50967 - 50805
Alignment:
Q  1 tcagtagaaaagttatcgacataatctctagtacattatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttattttagtatat 100  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50967 tcagtaaaaaagttatcaacataatctctagtacattatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttattttcgtatat 50868  T
Q  101 gagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaaatatatataat 163  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  50867 gagaggagtttaactagaaattgcatatttgaatcactttccaaaagtaaaaatgtatataat 50805  T

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Target: scaffold0083; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 50795 - 50758
Alignment:
Q  194 gtgactgcaatttttcctttttcattgtatcaattatt 231  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  50795 gtgactgcaatttttcctttttctttgtatcaattatt 50758  T

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Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 26793328 - 26793486
Alignment:
Q  5 tagaaaagttatcgacataatctctagtacattatttttaattttgaacacagatgataagaaaaatgacaacatgatacattta-ttttagtatatgag 103  Q
    |||||| |||||| || |||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||    
T  26793328 tagaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgag 26793427  T
Q  104 aggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaaatatatataa 162  Q
    ||||||||||||||||||||||||||||| |||||| || || |||||||| |||||||    
T  26793428 aggactttaactagaaattgcatatttgactcactttcctaaggtaaaaatgtatataa 26793486  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 26818844 - 26818979
Alignment:
Q  5 tagaaaagttatcgacataatctctagtacattatttttaattttgaacacagatgataagaaaaatgacaacatgatacattta-ttttagtatatgag 103  Q
    |||||| |||||| || |||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||    
T  26818844 tagaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgag 26818943  T
Q  104 aggactttaactagaaattgcatatttgaatcactt 139  Q
    ||||||||||||||||||||||||||||| ||||||    
T  26818944 aggactttaactagaaattgcatatttgactcactt 26818979  T

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Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 10214745 - 10214903
Alignment:
Q  5 tagaaaagttatcgacataatctctagtacattatttttaattttgaacacagatgataagaaaaatgacaacatgatacattta-ttttagtatatgag 103  Q
    |||||| |||||| || |||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||    
T  10214745 tagaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgag 10214844  T
Q  104 aggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaaatatatataa 162  Q
    ||||||||||||||||||||||||||||| |||||| || || |||||||| |||||||    
T  10214845 aggactttaactagaaattgcatatttgactcactttcctaaggtaaaaatgtatataa 10214903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 10223486 - 10223644
Alignment:
Q  5 tagaaaagttatcgacataatctctagtacattatttttaattttgaacacagatgataagaaaaatgacaacatgatacattta-ttttagtatatgag 103  Q
    |||||| |||||| || |||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||    
T  10223486 tagaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgag 10223585  T
Q  104 aggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaaatatatataa 162  Q
    ||||||||||||||||||||||||||||| |||||| || || |||||||| |||||||    
T  10223586 aggactttaactagaaattgcatatttgactcactttcctaaggtaaaaatgtatataa 10223644  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 10103809 - 10103966
Alignment:
Q  5 tagaaaagttatcgacataatctctagtacattatttttaattttgaacacagatgataagaaaaatgacaacatgatacattta-ttttagtatatgag 103  Q
    |||||| |||||| || |||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||    
T  10103809 tagaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgag 10103908  T
Q  104 aggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaaatatatata 161  Q
    |||| |||||||||||||||||||||||| |||||| || ||||||||||| ||||||    
T  10103909 aggaatttaactagaaattgcatatttgactcactttcctaaagtaaaaatgtatata 10103966  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 10123641 - 10123755
Alignment:
Q  36 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaat 134  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10123641 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaat 10123738  T
Q  135 cacttaccaaaagtaaa 151  Q
    ||||| || ||||||||    
T  10123739 cactttcctaaagtaaa 10123755  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 10180295 - 10180409
Alignment:
Q  36 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaat 134  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10180295 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaat 10180392  T
Q  135 cacttaccaaaagtaaa 151  Q
    ||||| || ||||||||    
T  10180393 cactttcctaaagtaaa 10180409  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 10256410 - 10256524
Alignment:
Q  36 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaat 134  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10256410 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacgtttatttttagtatatgagaggactttaacgagaaattgcatatttgaat 10256507  T
Q  135 cacttaccaaaagtaaa 151  Q
    ||||| || ||||||||    
T  10256508 cactttcctaaagtaaa 10256524  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 10028802 - 10028854
Alignment:
Q  99 atgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 151  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10028802 atgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 11768325 - 11768441
Alignment:
Q  120 attgcatatttgaatcacttaccaaaagtaaaaatatatat-aattatatgctattt-aagattccgatggttttagt---gactgcaatttttcctttt 214  Q
    |||||||||||||||||||| |||||||||||||| ||||| || ||| |||||||| |||||| |||||  |||| |   |  ||||| ||||||||||    
T  11768325 attgcatatttgaatcactttccaaaagtaaaaatgtatataaagtatctgctatttaaagatttcgatgcctttaattaagtgtgcaacttttcctttt 11768424  T
Q  215 tcattgtatcaattatt 231  Q
    || ||||||||||||||    
T  11768425 tctttgtatcaattatt 11768441  T

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