View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6846_low_12 (Length: 216)
Name: NF6846_low_12
Description: NF6846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6846_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 28136175 - 28135987
Alignment:
| Q |
11 |
gatggacatcaacaacacacaactaaacagtagttcactgttattaaaattaagaatgaacaaggatgatgattggccaaggcactataagcagcactat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28136175 |
gatgtacatcaacaacacacaactaaacagtagttcactgttattaaaattaagaatgaacaaggatgatgattggccaaggcactataagcagcactat |
28136076 |
T |
|
| Q |
111 |
tgccatctatatagccaacttgggatttaaacacatcccgctcatgcctaggactagaaatttgtaagatcggacaattgtcgtgatgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28136075 |
tgccatctatatagccaacttgggattttaacacatcccgctcatgcctaggactagaaatttgtaagatcggacaattgtcgtgatgt |
28135987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 28136432 - 28136302
Alignment:
| Q |
26 |
cacacaactaaacagtagttcactgttattaaaattaagaatgaacaaggatgatgattggccaaggcactataagcagcactattgccatctatatagc |
125 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
28136432 |
cacagaactaaaaagtagttcactgttattaaaattaagaatggacagggatgatgattgaccaaggcactataagcagcactactgccatttatatagc |
28136333 |
T |
|
| Q |
126 |
caacttgggatttaaacacatcccgctcatg |
156 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
|
|
| T |
28136332 |
ccacttgggatttaaacacatcccgctcatg |
28136302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 28136231 - 28136181
Alignment:
| Q |
139 |
aaacacatcccgctcatgcctaggactagaaatttgtaagatcggacaattg |
190 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||||||||||||||| |||||| |
|
|
| T |
28136231 |
aaacgcatcccgctcgtgcc-aggactagaaatttgtaagatcggtcaattg |
28136181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University