View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6846_low_3 (Length: 377)
Name: NF6846_low_3
Description: NF6846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6846_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 50187162 - 50186816
Alignment:
| Q |
17 |
gtgttcaatgtccatgtcacatagattatactactatcactatgcttataggaatgcatgtgatatataaacatgctattatgacacagcaaagtagaag |
116 |
Q |
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| T |
50187162 |
gtgttcaatgtccatgtcacatagattatactactatcactatgcttataggaatgcatgtgatatataaacatgctattatgacacagcaaagtagaag |
50187063 |
T |
|
| Q |
117 |
tgtagagctataaccaaaggaagcatgaagcatcctttgtttgtttacctgaaaaattggagaaggaaaccattcaggtatctcctctttctcctccata |
216 |
Q |
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| T |
50187062 |
tgtagagctataaccaaaggaagcatgaagcatcctttgtttgttcacctgaaaaattggagaaggaaaccattcaggtatctcccctttctcctccata |
50186963 |
T |
|
| Q |
217 |
tccaaatacatttgagcattcaaaagtgggattccatcttctgtgaagatcagttcaagggcatgctgtctgcagaaactgtctctcagacgatcaactt |
316 |
Q |
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| T |
50186962 |
tccaaatacatttgagcattcaaaagtgggattccatcttctgtgaagatcagttcaagggcatgctgtctgcagaaactgtctctcagacgatcaactt |
50186863 |
T |
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| Q |
317 |
cgcgctggagtcttttcttcagttcacgctgttccggaggtctttgt |
363 |
Q |
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| T |
50186862 |
cgcgctggagtcttttcttcagttcacgctgttccggaggtctttgt |
50186816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 110 - 363
Target Start/End: Original strand, 16294507 - 16294758
Alignment:
| Q |
110 |
gtagaagtgtagagctataaccaaaggaagcatgaagcatcctttgtttgtttacctgaaaaattggagaaggaaaccattcaggtatctcctctttctc |
209 |
Q |
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| T |
16294507 |
gtagatgtgtagagctataacctaaggaagcatgaaacatcctttgttt--ttacctgaaaaattccagaaggaaaccattcaggtctctcccctttctc |
16294604 |
T |
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| Q |
210 |
ctccatatccaaatacatttgagcattcaaaagtgggattccatcttctgtgaagatcagttcaagggcatgctgtctgcagaaactgtctctcagacga |
309 |
Q |
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||||||| ||||||||||||||| ||||| |||||| || ||| |||||||||| |||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
16294605 |
ctccatacccaaatacatttgagaattcacaagtggttcaccgtctactgtgaagatgagttcaagagcatgttgtctgcagaaaatgtctctcagacga |
16294704 |
T |
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| Q |
310 |
tcaacttcgcgctggagtcttttcttcagttcacgctgttccggaggtctttgt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
16294705 |
tcaacttcgcgctggagtcttttcttcagttcacgctgctccggaggtttttgt |
16294758 |
T |
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