View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6846_low_4 (Length: 373)
Name: NF6846_low_4
Description: NF6846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6846_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 153 - 330
Target Start/End: Original strand, 14983273 - 14983450
Alignment:
| Q |
153 |
attctaataacaactaacaaatcaaacaaaaatatgagtcaaatagttatttagtgtttgctcattaaatgagttgcaacattgtgtgtaacggttttgt |
252 |
Q |
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| T |
14983273 |
attcttatagcaactaacaaatcaaataaaaatatgagtcaaataattatttagagtttggtcattaaaagagttgcaatattgtaggtaacatctttgt |
14983372 |
T |
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| Q |
253 |
agatttagacagttggatttgtataattttttgtattattcaatctaaccccgctgctctgaaacaatcatttttatg |
330 |
Q |
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| T |
14983373 |
agaattagacagttggatttgtttaattttttgtattattcaatctaaccacacttctctgcaacaatcatttttatg |
14983450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 18783042 - 18783133
Alignment:
| Q |
26 |
ctcctttttaacatggagaaatctgtttctggtgttagtaaaacaaaaagaagtttaggaattgatatacaattggttcatttttattatat |
117 |
Q |
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| T |
18783042 |
ctcctttttagcatggagtaatttgtttctaatgttagtaaaacaaaatgaagtttaggaattgatatacaattggttcatttttaatatat |
18783133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 14982589 - 14982680
Alignment:
| Q |
14 |
ttgaacttatatctcctttttaacatggagaaatctgtttctggtgt--tagtaaaacaaaaagaagtttaggaattgatatacaattggtt |
103 |
Q |
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| T |
14982589 |
ttgaacttatcactcctttttagcacggagaaatctgtttctggtgttataggaaaacaaaacaaagtttaggaattgatatacaattggtt |
14982680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 18783751 - 18783836
Alignment:
| Q |
279 |
ttttttgtattattcaatctaaccccgctgctct--gaaacaatcatttttatggtgtgcacatttcttcctttttgatgtccatc |
362 |
Q |
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| T |
18783751 |
ttttttgtattattcattctaaccccacttctctctgcaacaatcatttttatggtgtgcttagttcttccctttttatgtacatc |
18783836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 18507930 - 18507818
Alignment:
| Q |
1 |
ttgttatctttctttgaacttatatctcctttttaacatggagaaatctgtttctggtgttagtaaaacaaaaagaagtttaggaattgatatacaattg |
100 |
Q |
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| T |
18507930 |
ttgttatttttctt-gaacttatccctcctctttagcattgagtaatttgtttttggtgttagtaaaacaaaacgaagtttaggaattg---cacaattg |
18507835 |
T |
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| Q |
101 |
gttcatttttattatat |
117 |
Q |
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| T |
18507834 |
gttcatttttattatat |
18507818 |
T |
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