View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6846_low_7 (Length: 272)
Name: NF6846_low_7
Description: NF6846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6846_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 23768461 - 23768211
Alignment:
| Q |
17 |
acattgttttaaggtagctatgtgctatcgaaagtagggttgtgtgtaaaagatgttgnnnnnnnnnctaaatgattaatgtttataagatggatctgat |
116 |
Q |
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| T |
23768461 |
acattgttttaaggtagctatgtgctatcgaaagtagggttgtgtgtaaaagatgttgaaaaaaaaactaaatgattaatgtttataagatggatctgat |
23768362 |
T |
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| Q |
117 |
gtttgttaaatttcttgcaagaagagtgtcttttagttttgaagaaattagaaattttaggaataactaagaataca-----gtatttcaacttgttaga |
211 |
Q |
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| T |
23768361 |
gtttgttaaatttcttgcaagaagagtggcttttagttttgaagaaattagaaattttaggaataactaagaatacattgcggtatttcaacttgttaga |
23768262 |
T |
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| Q |
212 |
acttagaaatatgatttattacgtgatgaaatggtgccttccgtggtgatg |
262 |
Q |
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| T |
23768261 |
acttagaaatatgatttattacgtgatgaaatggtgccttccgtggtgatg |
23768211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 23818309 - 23818059
Alignment:
| Q |
17 |
acattgttttaaggtagctatgtgctatcgaaagtagggttgtgtgtaaaagatgttgnnnnnnnnnctaaatgattaatgtttataagatggatctgat |
116 |
Q |
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| T |
23818309 |
acattgttttaaggtagctatgtgctatcgaaagtagggttgtgtgtaaaagatgttgaaaaaaaaactaaatgattaatgtttataagatggatctgat |
23818210 |
T |
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| Q |
117 |
gtttgttaaatttcttgcaagaagagtgtcttttagttttgaagaaattagaaattttaggaataactaagaataca-----gtatttcaacttgttaga |
211 |
Q |
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| T |
23818209 |
gtttgttaaatttcttgcaagaagagtggcttttagttttgaagaaattagaaattttaggaataactaagaatacattgcggtatttcaacttgttaga |
23818110 |
T |
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| Q |
212 |
acttagaaatatgatttattacgtgatgaaatggtgccttccgtggtgatg |
262 |
Q |
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| T |
23818109 |
acttagaaatatgatttattacgtgatgaaatggtgccttccgtggtgatg |
23818059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 23645493 - 23645636
Alignment:
| Q |
101 |
ataagatggatctgatgt--ttgttaaatttcttgcaagaagagtgtcttttagttttgaagaaattagaaattttaggaataactaagaatac-----a |
193 |
Q |
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| T |
23645493 |
ataagatggatgtgatgtgtttgttaaatttcttgcaagaagagtggcttttagttttgaagaaattagaaaaattaggagtaactaagaatacgttgtg |
23645592 |
T |
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| Q |
194 |
gtatttcaacttgttagaacttagaaatatgatttattacgtga |
237 |
Q |
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| T |
23645593 |
gtatttcagcttgttagaacttagaaatatagtttattacgtga |
23645636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 23813081 - 23812938
Alignment:
| Q |
101 |
ataagatggatctgatgt--ttgttaaatttcttgcaagaagagtgtcttttagttttgaagaaattagaaattttaggaataactaagaatac-----a |
193 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
23813081 |
ataagatggatgtgatgtgtttgttaaatttcttgcaagaagagtggcttttagttttgaagaaattagaaaaattaggagtaactaagaatacgttgtg |
23812982 |
T |
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| Q |
194 |
gtatttcaacttgttagaacttagaaatatgatttattacgtga |
237 |
Q |
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| T |
23812981 |
gtatttcagcttgttagaacttagaaatatagtttattacgtga |
23812938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 23779972 - 23779933
Alignment:
| Q |
194 |
gtatttcaacttgttagaacttagaaatatgatttattac |
233 |
Q |
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| T |
23779972 |
gtatttcaacttgttagaacttagaaatataatttattac |
23779933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 23866925 - 23866886
Alignment:
| Q |
194 |
gtatttcaacttgttagaacttagaaatatgatttattac |
233 |
Q |
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| T |
23866925 |
gtatttcaacttgttagaacttagaaatataatttattac |
23866886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 23733060 - 23733097
Alignment:
| Q |
194 |
gtatttcaacttgttagaacttagaaatatgatttatt |
231 |
Q |
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| T |
23733060 |
gtatttcaacttgttataacttagaaatataatttatt |
23733097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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