View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6846_low_9 (Length: 240)
Name: NF6846_low_9
Description: NF6846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6846_low_9 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 48 - 230
Target Start/End: Complemental strand, 31093691 - 31093509
Alignment:
| Q |
48 |
cagaatattgcagatttagatttgacaaccaacatcaatgttgcctcttgcaaagaggtgctttaatattttagctacacacccactacattgtgcaata |
147 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
31093691 |
cagaatattgcagatttagacttgacaaccaacatcaatgctgcctcttgcaaagaggtgctttaatattttaactacgcacccactacattgtgcaata |
31093592 |
T |
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| Q |
148 |
aatccgccccaggccctcctacactcccgagcagactaagcaactgactgattacacaaggaccacacaccaacaccaaactc |
230 |
Q |
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| T |
31093591 |
aatccgccccaggccctcctacactcccgagcagactaagcaactgactgattacacaaggaccacacaccaacactaaactc |
31093509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 31033742 - 31033790
Alignment:
| Q |
180 |
agactaagcaactgactgattacacaaggaccacacaccaacaccaaac |
228 |
Q |
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| T |
31033742 |
agactaagcagctgactgactacacaaggatcacacaccaacactaaac |
31033790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 2363 - 2184
Alignment:
| Q |
48 |
cagaatattgcagatttagatttgacaaccaacatcaat----gttgcctcttgcaaagaggtgctttaatattttagctacacacccactacattgtgc |
143 |
Q |
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|||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
2363 |
cagaatattgcagatttagacttgacaaccaacatcattcaaagcggcctcttgcaaagaggtgctttaatatttcagctacgcacccactacattgtgc |
2264 |
T |
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| Q |
144 |
aataaatccgccccaggccctcctacactcccgagcagactaagcaactgactgattacacaaggaccacacaccaacac |
223 |
Q |
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| T |
2263 |
aataaatccaccccaggctctcctacactcccgagcagactaagcaactgactgattacacaaggaccacacaccaacac |
2184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 173333 - 173253
Alignment:
| Q |
89 |
tgcctcttgcaaagaggtg---ctttaatattttagctacacacccactacattgtgcaataaatccgccccaggccctcc |
166 |
Q |
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||||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||| || |||||||||| |
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| T |
173333 |
tgcctcttgcaaagaggtggtgctttaatatttcagttctgcacccactacattgtgcaataaatcctcctcaggccctcc |
173253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 31261 - 31213
Alignment:
| Q |
180 |
agactaagcaactgactgattacacaaggaccacacaccaacaccaaac |
228 |
Q |
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|||||||||| |||||||| |||||||||| ||||||||||||| |||| |
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| T |
31261 |
agactaagcagctgactgactacacaaggatcacacaccaacactaaac |
31213 |
T |
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