View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6847_high_5 (Length: 233)
Name: NF6847_high_5
Description: NF6847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6847_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 29752861 - 29753056
Alignment:
| Q |
19 |
gatttagctaatatggacacttctgcagatgcatatgtaatga---ttgggagtattagacaattgactctgattgttgacgatgttgctgacatttgaa |
115 |
Q |
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| T |
29752861 |
gatttagctaatatggacacttctgcagatacatatgtaatgatgattgggagtattagacaattgactctgattgttgacgatgttgctgacatttgaa |
29752960 |
T |
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| Q |
116 |
agtttcatattttatttttgacaaagtgtgcttgaatgtctcaagaaacttgtattcaagcatatatggtttgcatgttttattaatcagattatc |
211 |
Q |
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| T |
29752961 |
agtttcatattttatttttgacaaagtgtgcttgaatgtctcaagaaacttgtattcaagcatatatggtttgcatgttttattaatcagattatc |
29753056 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 41099884 - 41099821
Alignment:
| Q |
106 |
gacatttgaaagtttcatattttatttttgacaaagtgtgcttgaatgtctcaagaaacttgtat |
170 |
Q |
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| T |
41099884 |
gacatttgaaagtctgatattttatttttga-acagtgtacttgaatttctcaagaaccttgtat |
41099821 |
T |
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