View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6847_low_2 (Length: 562)
Name: NF6847_low_2
Description: NF6847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6847_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Original strand, 5178809 - 5179348
Alignment:
| Q |
20 |
aatgtttaactacacttttaataattaatgtgacaaatgaaaacaaaccttgttacacctctatattgagatgttctttgcccaaaggtttggttctgat |
119 |
Q |
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| T |
5178809 |
aatgtttaactacacttttaataattaatgtgacaaatgaaaacaaaccttgttacacctctatactgagatgttctttgcccaaaggtttggttctgat |
5178908 |
T |
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| Q |
120 |
tctttttcaagttcaccatttgatgcttccttttcatcgtatcaatggaagcagaatcaataggtgatgtttgttgtgaacttgtaacacagctcgattg |
219 |
Q |
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| T |
5178909 |
tctttttcaagttcaccatttgatgcttccttttcatcgtatcaatggaagcagaatcaataggtgatgtttgttgtgaacttgtaacacagctcgattg |
5179008 |
T |
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| Q |
220 |
tgagctagaacttgcagacagcacacatgtcttcgagtcttgtgcatggcttgcagcatgaaagtcccttgatacccatctccttagatcagaaatttcg |
319 |
Q |
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| T |
5179009 |
tgagctagaacttgcagacagcacacatgtcttcgagtcttgtgcatggcttgcagcatgaaagtcccttgatacccatctccttagatcagaaatttcg |
5179108 |
T |
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| Q |
320 |
tcctcaactatatttggtagctggacattatcttctagctgatatttcatcggccagtctaagatcacattgtcgtttcttaagacggtgtaacatgaga |
419 |
Q |
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| T |
5179109 |
tcctcaactatatttggtagctggacattatcttctagctgatatttcatcggcccgtctaagatcacattgtcgtttcttaagacggtgtaacatgaga |
5179208 |
T |
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| Q |
420 |
gctgttgcttctggtgctctaccaaactccccaacaggctcatattctcttgtacatgatttaggttatttgaattgtttggcttatggtatgaagtttg |
519 |
Q |
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| T |
5179209 |
gctgttgcttctggtgctctaccaaactccccaacaagctcatattctcttgtacatgatttaggttatttgaattgtttggcttatggtatgaagtttg |
5179308 |
T |
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| Q |
520 |
gttgtcaaaaatactatctatgcttagttgcatttcttct |
559 |
Q |
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| T |
5179309 |
gttgtcaaaaatactatctatgcttagttgcatttcttct |
5179348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 40189378 - 40189339
Alignment:
| Q |
66 |
accttgttacacctctatattgagatgttctttgcccaaa |
105 |
Q |
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| T |
40189378 |
accttgttacacctctatattgagaggttctttgaccaaa |
40189339 |
T |
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