View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6847_low_4 (Length: 253)
Name: NF6847_low_4
Description: NF6847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6847_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 12197458 - 12197695
Alignment:
| Q |
1 |
catgatcgctttatcagaaagagtctcaccacatagcttcatctgatttgtgattgttttaattgattagaaatattcctctatcttcttttctttcttc |
100 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
12197458 |
catgattgctttatcagaaagagtctcacaacatagcttcatctgatttgtgattgtttgaattgattagaaatattcctctatgttcttttctttcttc |
12197557 |
T |
|
| Q |
101 |
atctttagcaattcatattgtcttctcaatgattgcaatcttatcttcttcacctaatcatccccactgaagtatttcataagtatatcccaagcttcct |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
12197558 |
atcttcagcaattcatattgtcttctcaatgattgcaatcttatcttcttcaccttatcatccccactgaagtatttcacaagtgtatcccaagcttcct |
12197657 |
T |
|
| Q |
201 |
taaagctttttgcatctgcaatctttccaaataccttg |
238 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| |
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| T |
12197658 |
taaagctttttgcatatgcaatcttttcaaataccttg |
12197695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 33682619 - 33682385
Alignment:
| Q |
10 |
tttatcagaaagagtctcaccacatagcttcatctgatttgtgattgttttaattgattagaaatattcctctatcttcttttctttcttcatctttagc |
109 |
Q |
| |
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|||||||||||| |||||||||||||| || |||||||||||||||| || || || ||||||| || |||||||| | |||||||||||||| ||| |
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| T |
33682619 |
tttatcagaaagtgtctcaccacatagttt-atctgatttgtgattgcttaaacatatgagaaataatcttctatcttttcttctttcttcatctaaagc |
33682521 |
T |
|
| Q |
110 |
aattcatattgtcttctcaatgattgcaatcttatcttcttcacctaatcatccccactgaagtatttcataagtatatcccaagcttccttaaagcttt |
209 |
Q |
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|||||||||||||||||||||||||| || || ||||||||||| | | ||| |||||||| || |||| | || |||| || |||||||| | |||| |
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| T |
33682520 |
aattcatattgtcttctcaatgattgtaacctaatcttcttcactttgttatctccactgaaatacttcacaggtgtatctcatgcttccttgtaacttt |
33682421 |
T |
|
| Q |
210 |
ttgcatctgcaatctttccaaataccttgatgtcca |
245 |
Q |
| |
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|| |||||||||||| |||| |||||| |||||| |
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| T |
33682420 |
ctgaatctgcaatcttctcaaaaaccttgttgtcca |
33682385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 33699673 - 33699439
Alignment:
| Q |
10 |
tttatcagaaagagtctcaccacatagcttcatctgatttgtgattgttttaattgattagaaatattcctctatcttcttttctttcttcatctttagc |
109 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||||||||||||||| || || || ||||||| || |||||||| | |||||||||||||| ||| |
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|
| T |
33699673 |
tttatcagaaagtgtctcaccacatagttt-atctgatttgtgattgcttaaacatatgagaaataatcttctatcttttcttctttcttcatctaaagc |
33699575 |
T |
|
| Q |
110 |
aattcatattgtcttctcaatgattgcaatcttatcttcttcacctaatcatccccactgaagtatttcataagtatatcccaagcttccttaaagcttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| | | ||| |||||||| || |||| | || |||| || |||||||| | |||| |
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|
| T |
33699574 |
aattcatattgtcttctcaatgattgtaacctaatcttcttcactttgttatctccactgaaatacttcacaggtgtatctcatgcttccttgtaacttt |
33699475 |
T |
|
| Q |
210 |
ttgcatctgcaatctttccaaataccttgatgtcca |
245 |
Q |
| |
|
|| |||||||||||| |||| |||||| |||||| |
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|
| T |
33699474 |
ctgaatctgcaatcttctcaaaaaccttgttgtcca |
33699439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 14637667 - 14637545
Alignment:
| Q |
10 |
tttatcagaaagagtctcaccacatagcttcatctgatttgtgattgttttaattgattagaaatattcctctatcttcttttctttcttcatctttagc |
109 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||| |||||||||||| || ||| ||||||| || | |||||| | |||||||||||||| || |
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| T |
14637667 |
tttatcaaaaagagtctcaccacaaatcttcatctgctttgtgattgttagaacagatgagaaataatcttttatcttatcttctttcttcatctaaagt |
14637568 |
T |
|
| Q |
110 |
aattcatattgtcttctcaatga |
132 |
Q |
| |
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|||| ||||||||||||||||| |
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|
| T |
14637567 |
aattagtattgtcttctcaatga |
14637545 |
T |
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