View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6848_low_1 (Length: 664)
Name: NF6848_low_1
Description: NF6848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6848_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 14 - 650
Target Start/End: Original strand, 44209934 - 44210570
Alignment:
| Q |
14 |
acatcaaatggaggatagtcaaacaatcggagacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatcaactttgaac |
113 |
Q |
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| T |
44209934 |
acatcaaatggaggatagtcaaacaatcggagacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatcaactttgaac |
44210033 |
T |
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| Q |
114 |
caaaatacatgtcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaattaaatttcaac |
213 |
Q |
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| T |
44210034 |
caaaatacatgtcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaattaaatttcaac |
44210133 |
T |
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| Q |
214 |
actttgtgcagcattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatcacatgtcaa |
313 |
Q |
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| T |
44210134 |
actttgtgcagcattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatcacatgtcaa |
44210233 |
T |
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| Q |
314 |
ttcatctacaaaatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcctaatgtccaa |
413 |
Q |
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| T |
44210234 |
ttcatctacaaaatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcctaatgtccaa |
44210333 |
T |
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| Q |
414 |
aatttacaattcttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttactattttgttggttcattccaggatattgggga |
513 |
Q |
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| T |
44210334 |
aatttacaattcttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttaccattttgttggttcattccaggatattgggga |
44210433 |
T |
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| Q |
514 |
ttcctggagcgtcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtatgatgggcgt |
613 |
Q |
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| T |
44210434 |
ttcctggagcgtcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtatgatgggcgt |
44210533 |
T |
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| Q |
614 |
tgctggttgatgcagtagaccttgggttggtatgatg |
650 |
Q |
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| T |
44210534 |
tgctggttgatgcagtagaccttgggttggtatgatg |
44210570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 631
Target Start/End: Original strand, 44210553 - 44210593
Alignment:
| Q |
591 |
ccttgggttggtatgatgggcgttgctggttgatgcagtag |
631 |
Q |
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| T |
44210553 |
ccttgggttggtatgatggacgttgctggttgatgcagtag |
44210593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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