View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6848_low_2 (Length: 489)
Name: NF6848_low_2
Description: NF6848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6848_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 12 - 483
Target Start/End: Complemental strand, 34187337 - 34186866
Alignment:
| Q |
12 |
acatcattcaccaaatgcataactccattaatcaaaagtttgacaacacccttcccattgaccttaagagcataattatttcctaattttacctcatcac |
111 |
Q |
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| T |
34187337 |
acatcattcacaaaatgcataactccattaatcaaaagtttgacaacacccttcccattgaccttaagagcataattatttcctaattttacctcatcac |
34187238 |
T |
|
| Q |
112 |
aaaaagaagcatcaagtgaagaaaaccagtcctttctacctgtcatatggttgctacagcctgaatcgatgaaccacatgtcttgtgtatttgattctcc |
211 |
Q |
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| T |
34187237 |
aaaaagaagcatcaagtgaagaaaaccagtcctttctacctgtcatatggttgctgcagcctgaatcgatgaaccacatgtcttgtgtatttgattctcc |
34187138 |
T |
|
| Q |
212 |
atctgatgaaagttgtgccatgagtagcactgcttcctcgttggtctcagcataatttgcggtgttgttcaggggtttatttgggcattcatactggaaa |
311 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34187137 |
atctgatgaaagttgtgccatgagtagcattgcttcctcgttggtctcaacataatttgcggtgttgttcaggggtttatttgggcattcatactggaaa |
34187038 |
T |
|
| Q |
312 |
tgtccaaactcatggcaataataacactccactgctgcctttcctcctctacctcctctgcctcttcctcgagtagctccacctcgaaagccacctcttc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34187037 |
tgtccaaactcatggcaataataacactccactgctgcctttcctcctctacctcctttgcctcttcctcgagtagctccacctcgaaagccacctcttc |
34186938 |
T |
|
| Q |
412 |
cgcggctacggccagcacttgtctcatcttgagttactttcagcacttgctcttcgtgtgaatgatgtccat |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34186937 |
cgcggctacggccagcacttgtctcatcttgagttactttcagcacttgctcttcgtgtgaattatgtccat |
34186866 |
T |
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