View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6848_low_4 (Length: 278)
Name: NF6848_low_4
Description: NF6848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6848_low_4 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 24491680 - 24491863
Alignment:
| Q |
1 |
ttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24491680 |
ttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaa |
24491779 |
T |
|
| Q |
101 |
atatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24491780 |
atatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24491863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 24495238 - 24495421
Alignment:
| Q |
1 |
ttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24495238 |
ttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaa |
24495337 |
T |
|
| Q |
101 |
atatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495338 |
atatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24495421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 2810243 - 2810371
Alignment:
| Q |
8 |
gagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtt |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
2810243 |
gagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattattaggacaacaaatatgtt |
2810342 |
T |
|
| Q |
108 |
tctatatattgtgccaatataccttgtga |
136 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
2810343 |
tctatatattgtaccaatataccttgtga |
2810371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 24358993 - 24359176
Alignment:
| Q |
1 |
ttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24358993 |
ttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaa |
24359092 |
T |
|
| Q |
101 |
atatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24359093 |
atatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24359176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 86739 - 86922
Alignment:
| Q |
1 |
ttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86739 |
ttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaa |
86838 |
T |
|
| Q |
101 |
atatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttatac |
185 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
86839 |
atatgtttctatatattgtgccaaaataccttgtgaatgatatagc-aaaaatcattattccttatatatcattattccttatac |
86922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 18556755 - 18556573
Alignment:
| Q |
1 |
ttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18556755 |
ttaagatgagagttattctgtgatcaagaaataatatcacactataattgactagagaaagtcaaaccatagctggaggaagcaattattaggacagcaa |
18556656 |
T |
|
| Q |
101 |
atatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
184 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18556655 |
atatgtttctatatattgtaccaatataccttgtgaatgatatagca-aaaatcattattccatacatatcattattccttata |
18556573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 22684888 - 22684964
Alignment:
| Q |
185 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattcagtttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22684888 |
cttacagttgtccaaattgctatctgtgatgcatataactctttgggcatgtttaaggtaaactgggattcaatttt |
22684964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 22697011 - 22697087
Alignment:
| Q |
185 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattcagtttt |
261 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22697011 |
cttacagttgtccaagttgctatctttgatgcatataactctttgggcatgtttaaggtaaactgggattcagtttt |
22697087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University