View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6848_low_7 (Length: 236)
Name: NF6848_low_7
Description: NF6848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6848_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 596116 - 596321
Alignment:
| Q |
19 |
caaacagcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
596116 |
caaacagcctccatttaagtttattttccaatcgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagc |
596215 |
T |
|
| Q |
119 |
catgtaaaactgcaggagaataccgttggatgaacaattggatataatatttttggcctgaatgaaaacctgtaaatttctccaaacatgagtgtgtgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
596216 |
catgtaaaactgcaggagaataccgttggatgaacaattggatataatatttttggtctgaatgaaaacctgtaaatttctccaaacatgagtgtgtgaa |
596315 |
T |
|
| Q |
219 |
ctccaa |
224 |
Q |
| |
|
|||||| |
|
|
| T |
596316 |
ctccaa |
596321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 17373714 - 17373919
Alignment:
| Q |
19 |
caaacagcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagc |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17373714 |
caaacatcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagc |
17373813 |
T |
|
| Q |
119 |
catgtaaaactgcaggagaataccgttggatgaacaattggatataatatttttggcctgaatgaaaacctgtaaatttctccaaacatgagtgtgtgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17373814 |
catgtaaaactgcaggagaataccgttggatgaacaattggatataatatttttggtctgaatgaaaacctgtaaatttctccaaacatgagtgtatgaa |
17373913 |
T |
|
| Q |
219 |
ctccaa |
224 |
Q |
| |
|
|||||| |
|
|
| T |
17373914 |
ctccaa |
17373919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 6613356 - 6613295
Alignment:
| Q |
79 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
140 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
6613356 |
gtcgtaaatgtcaagataatgtcgatgcgggtttccaggccatgtaaaactgcagaagaata |
6613295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 6608825 - 6608704
Alignment:
| Q |
19 |
caaacagcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagc |
118 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||||| ||| ||| ||| ||||||||||||||||| ||||| | ||||||||| | || |
|
|
| T |
6608825 |
caaacagcctccatttacgtttattccccatgtgcaatgattgcaattgtgacggttttggtcgtaaatgtcaagataataaacatgggggttttgaggc |
6608726 |
T |
|
| Q |
119 |
catgtaaaactgcaggagaata |
140 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6608725 |
catgtaaaactgcaggagaata |
6608704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 9145868 - 9145929
Alignment:
| Q |
79 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
140 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| || |||||||||||| |||| |||||| |
|
|
| T |
9145868 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaata |
9145929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 9180564 - 9180503
Alignment:
| Q |
79 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
140 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| || |||||||||||| |||| |||||| |
|
|
| T |
9180564 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaata |
9180503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 22823229 - 22823281
Alignment:
| Q |
76 |
ttggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaac |
128 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||| |
|
|
| T |
22823229 |
ttggtcgtaaatgtcaagataatgtcgatgtgggtttccaggccatgtaaaac |
22823281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 6632035 - 6631970
Alignment:
| Q |
80 |
tcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaataccgtt |
145 |
Q |
| |
|
||||| ||||||| ||||||| | || ||||| ||| ||||||||||||||||| |||||| |||| |
|
|
| T |
6632035 |
tcgtagatgtcaagataatgaagttgagggtttccaggccatgtaaaactgcagaagaataacgtt |
6631970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 47401834 - 47401788
Alignment:
| Q |
172 |
tggcctgaatgaaaacctgtaaatttctccaaacatgagtgtgtgaa |
218 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
47401834 |
tggcttgaatgaaaacatgtaactttctccaaacataagtgtgtgaa |
47401788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University