View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6849_high_2 (Length: 427)
Name: NF6849_high_2
Description: NF6849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6849_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 35110989 - 35111415
Alignment:
| Q |
1 |
atgaatggatactacaaggtaatgtgcttatcaaaatacaaacctttcccaatacctttttgtcaatgttgttcaatcatatagttaaaccaaccttcat |
100 |
Q |
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| T |
35110989 |
atgaatggatactacaaggtaatgtgcttatcaaaatacaaacctttcccaatacctttttgtcaatgttgttcaatcatatagttaaaccaaccttcat |
35111088 |
T |
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| Q |
101 |
tggcattcatgaaacatcaaacaccttttacatgatattcaaacaaccctgtcaaaagtataggagtctataagcgtagcgtatttcacaattcataggc |
200 |
Q |
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| T |
35111089 |
tggcattcatgacacatcaaacaccttttccatgatattcaaacaaccctgtcaaaagtataggagtctataagcgtagcgtatttcacaattcataggc |
35111188 |
T |
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| Q |
201 |
acatcatgtgattttattgatgttttctggatgaagtcatgatagttacgtgtcctattattgcattagaatccattagctacaaaccaggccttggata |
300 |
Q |
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| T |
35111189 |
acatcatgtgattttattgatgttttctggatgaagtcatgatagttacgtgtcctattattgcattagaatccattagctacaaaccaggccttggata |
35111288 |
T |
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| Q |
301 |
aggatggctggctgaatactggtgatctagggtggattgctccccatcattctactgggcggagtcgtaactctagtggtgtgattgttgtggacggccg |
400 |
Q |
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| T |
35111289 |
aggatggctggctgaatactggtgatctagggtggattgctccccatcattctactgggcggagtcgtaactctagtggtgtgattgttgtggacggccg |
35111388 |
T |
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| Q |
401 |
tgctaaagacactattgtgctttcaac |
427 |
Q |
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| T |
35111389 |
tgctaaagacactattgtgctttcaac |
35111415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 256 - 425
Target Start/End: Complemental strand, 38118870 - 38118701
Alignment:
| Q |
256 |
tattattgcattagaatccattagctacaaaccaggccttggataaggatggctggctgaatactggtgatctagggtggattgctccccatcattctac |
355 |
Q |
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| T |
38118870 |
tattcttgcatcagaatcctttagctacaaatcgggtcattgatagtgatggctggctaaatactggtgacataggttggattgctgcccaccattcaac |
38118771 |
T |
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| Q |
356 |
tgggcggagtcgtaactctagtggtgtgattgttgtggacggccgtgctaaagacactattgtgctttca |
425 |
Q |
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| T |
38118770 |
tggacggagtcgtaattctggtggtgtgattgttgttgaaggccgtgctaaagacaccattgtgctttca |
38118701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 255 - 425
Target Start/End: Complemental strand, 38129207 - 38129037
Alignment:
| Q |
255 |
ctattattgcattagaatccattagctacaaaccaggccttggataaggatggctggctgaatactggtgatctagggtggattgctccccatcattcta |
354 |
Q |
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| T |
38129207 |
ctattcttgtatcagaatccttcagccacaaatcaggccatagacaaggatggctggctgaatactggtgacataggttggattgctgcctaccattcat |
38129108 |
T |
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| Q |
355 |
ctgggcggagtcgtaactctagtggtgtgattgttgtggacggccgtgctaaagacactattgtgctttca |
425 |
Q |
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| T |
38129107 |
ctggacggagtcgtaattgtggcggtgtgattgttgttgaaggtcgtgctaaagacaccattgtgctttca |
38129037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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