View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6849_low_1 (Length: 447)
Name: NF6849_low_1
Description: NF6849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6849_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 232 - 427
Target Start/End: Complemental strand, 22270149 - 22269954
Alignment:
| Q |
232 |
gttcaagaaagcactccgattccaaatctcgcttcgaagcttacaaccgcctccaagccgccgctgtcgctttcggcgagactctccccatccctgaaat |
331 |
Q |
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| T |
22270149 |
gttcaagaaagcactccgattccaaatctcgcttcgaagcttacaaccgcctccaagccgccgctgtcgctttcggcgagactctccccatccctgaaat |
22270050 |
T |
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| Q |
332 |
tgttgccgttggtggccaatctgatggaaagagctcccttctcgaagcactcctcggttttcgcttcaatgtccgtgaagttgagatgggtactcg |
427 |
Q |
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| T |
22270049 |
tgttgccgttggtggccaatctgatggaaagagctcccttctcgaagcactcctcggttttcgcttcaatgtccgtgaagttgagatgggtactcg |
22269954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 22270350 - 22270252
Alignment:
| Q |
36 |
aaaaagaaaagaaaaggcattttaaataaacgagagcataggaacgttaacccaaaattcaaattcaaatttcatttgcatcgctcccctccttttccc |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22270350 |
aaaaagaaaagaaaaggcattttaaataaacgagagcataggaacgttaacccaaaattcaaattcaaatttcattttgatcgctcccctccttttccc |
22270252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 22270890 - 22270851
Alignment:
| Q |
5 |
gagacggacggcaggtgaaaataagcacatgaaaaagaaa |
44 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
22270890 |
gagatggacggcaggtgaaaataagcacatgaaaaagaaa |
22270851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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