View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6849_low_4 (Length: 347)
Name: NF6849_low_4
Description: NF6849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6849_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 27074652 - 27074880
Alignment:
| Q |
18 |
aattttccatcaatttgttgtgcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagaga |
117 |
Q |
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| T |
27074652 |
aattttccatcaatttgttgtgcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagaga |
27074751 |
T |
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| Q |
118 |
gatgtgaaacgaacctccccttgtacaaacaactgtgaatacgaaatttaggtatgcatttcaccttgttctttctaactttataaagtatttattttat |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27074752 |
gatgtgaaacgaacctcctcttgtacaaacaactgtgaatacgaaatttaggtatggatttcaccttgttctttctaactttataaagtatttattttat |
27074851 |
T |
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| Q |
218 |
atgactgcatggactgtaatttaggaacc |
246 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
27074852 |
atgattgcatggactgtaatttaggaacc |
27074880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 27154745 - 27154973
Alignment:
| Q |
18 |
aattttccatcaatttgttgtgcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27154745 |
aattttccatcaatttgttgtgcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagaga |
27154844 |
T |
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| Q |
118 |
gatgtgaaacgaacctccccttgtacaaacaactgtgaatacgaaatttaggtatgcatttcaccttgttctttctaactttataaagtatttattttat |
217 |
Q |
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| T |
27154845 |
gatgtgaaacgaacctcctcttgtacaaacaactgtgaatacgaaatttaggtatggatttcaccttgttctttctaactttataaagtatttattttat |
27154944 |
T |
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| Q |
218 |
atgactgcatggactgtaatttaggaacc |
246 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
27154945 |
atgattgcatggactgtaatttaggaacc |
27154973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 27074880 - 27074927
Alignment:
| Q |
289 |
cacaactttcatgaccacttgcttgttttagttgtaacaaccatattc |
336 |
Q |
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| T |
27074880 |
cacaactttcatgaccacttgcttgttttagttgtaacaaccatattc |
27074927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 27154973 - 27155020
Alignment:
| Q |
289 |
cacaactttcatgaccacttgcttgttttagttgtaacaaccatattc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27154973 |
cacaactttcatgaccacttgcttgttttagttgtaacaaccatattc |
27155020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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