View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6849_low_6 (Length: 289)
Name: NF6849_low_6
Description: NF6849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6849_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 30404017 - 30403745
Alignment:
| Q |
1 |
tattttttataaaaaagttataagcacctagaatacttgtaaagaacaagacattgattataacgtacaaattgtagagtttttgtctaactcgtaatat |
100 |
Q |
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| T |
30404017 |
tattttttataaaatagttatatgcacctagaattcttgtaaagaacaaaacattgattataac--acaaattgtagagtgtttgtctaactcataatat |
30403920 |
T |
|
| Q |
101 |
atttaaacgtctgttagaatatcaacatcagaaatacaacatgcacaagcacccttttgtcaggcacaatcatctgcaatatgccaaaattatattttgg |
200 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30403919 |
atttaaacatctgttagaatatcaacatctgaaatacaacatgcacaagcacccttttgtcaggcacaatcatctgcaatattccaaaattatattttgg |
30403820 |
T |
|
| Q |
201 |
gggaaacaatgtgatggccttcaaagaaagtaaccaaaagataaccctc-ctaacctcctccttaacattctttt |
274 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30403819 |
gggaaacaatgtgatggccttcaaagaaagtaaccaaaagataaccctcactaacctcctccttaacattctttt |
30403745 |
T |
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