View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6850_low_3 (Length: 375)
Name: NF6850_low_3
Description: NF6850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6850_low_3 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 69801 - 70144
Alignment:
| Q |
14 |
tatggtgttgaggtcttgcagggtaaatcaaagacattggtgatccccactctcctttttcatttttgagggcagaattatgttttactttcttctttta |
113 |
Q |
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| T |
69801 |
tatggtgttgaggtcttgcagggtaaatcaaagacattggtgatccccacactcctttttcatttttgagggcagaattatgttttactttcttctttta |
69900 |
T |
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| Q |
114 |
tggtggttagaaggattattagttttactagtacatcgttatttttgttggttgaaaagtcatgtatgaaatcactttttgtgttgacaaagtcctcttc |
213 |
Q |
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| T |
69901 |
tggtggttagaaggattattagttttactagtacatcgttatttttgttggttgaaaagtcatgtatgaaatcactttttgtgttgacaaagtcttcttc |
70000 |
T |
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| Q |
214 |
cagataaagccatgttaatgatttcttccacatacttttggctaaagaaccaagcagtaaaggaccaatacagagcaaaacaagtggaaagggtggagag |
313 |
Q |
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| T |
70001 |
cagataaagccatgttaatgatttcttccacatacttttggctaaagaaccaagcagtaaaggaccaatacagagcaaaacaagtggaaagggtggagag |
70100 |
T |
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| Q |
314 |
gatgcagagtgagagttgtattggtttatatcacgagtatcaag |
357 |
Q |
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| T |
70101 |
gatgcagagtgagagttgtattggtttatatcacgagtatcaag |
70144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 40896483 - 40896140
Alignment:
| Q |
14 |
tatggtgttgaggtcttgcagggtaaatcaaagacattggtgatccccactctcctttttcatttttgagggcagaattatgttttactttcttctttta |
113 |
Q |
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| T |
40896483 |
tatggtgttgaggtcttgcagggtaaatcaaagacattggtgatccccacactcctttttcatttttgagggcagaattatgttttactttcttctttta |
40896384 |
T |
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| Q |
114 |
tggtggttagaaggattattagttttactagtacatcgttatttttgttggttgaaaagtcatgtatgaaatcactttttgtgttgacaaagtcctcttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40896383 |
tggtggttagaaggattattagttttactagtacatcgttatttttgttggttgaaaagtcatgtatgaaatcactttttgtgttgacaaagtcttcttc |
40896284 |
T |
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| Q |
214 |
cagataaagccatgttaatgatttcttccacatacttttggctaaagaaccaagcagtaaaggaccaatacagagcaaaacaagtggaaagggtggagag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40896283 |
cagataaagccatgttaatgatttcttccacatacttttggctaaagaaccaagcagtaaaggaccaatacagagcaaaacaagtggaaagggtggagag |
40896184 |
T |
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| Q |
314 |
gatgcagagtgagagttgtattggtttatatcacgagtatcaag |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40896183 |
gatgcagagtgagagttgtattggtttatatcacgagtatcaag |
40896140 |
T |
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