View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6850_low_4 (Length: 312)
Name: NF6850_low_4
Description: NF6850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6850_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 32626859 - 32627106
Alignment:
| Q |
1 |
aagttgtttctcagtttgcttcattgcaactggtgatggtggcagtgtagttgtgtctgataaatagtcttttgctttaccccacaccacagaatataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32626859 |
aagttgtttctcagtttgcttcattgcaactggtgatggtggcagtgtagttgtgtctgataaatagtcttttgctttaccccacaccacagaatataaa |
32626958 |
T |
|
| Q |
101 |
ccaactgcaataatcagggctccaatgatactgtaatcaacaaatagagaacatcaataaggttatttttagtgaatttgacatttatcaaaactctacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
32626959 |
ccaactgcaataatcagggctccaatgatactgtaatcaacaaatagagaacatcaataagattatttttagtgaatttgacatttatcaaaaccctacg |
32627058 |
T |
|
| Q |
201 |
aagccggacactccttagattaagtgtgt-cctgatgtttgacatgtg |
247 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
32627059 |
aagccggacactccttagattaagtgtgtccctgatgttggacatgtg |
32627106 |
T |
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