View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6851_high_7 (Length: 322)
Name: NF6851_high_7
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6851_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 31691595 - 31691273
Alignment:
| Q |
1 |
aggatacctttatctttagtgannnnnnnnatgtatattgtcgttatttgtaattgattctaatggtgtttgtttttgtatcagggagttgcgatgttgc |
100 |
Q |
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| T |
31691595 |
aggatacctttatctttagtgattttttttatgtatattgtcgttatttgtaattgattctaatggtgtttgtttttgtatcaaggagttgcgatgttgc |
31691496 |
T |
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| Q |
101 |
ctaacatgttcgctgctgagtttgaggaccaggttcaacgatttgaaactttgattgatccaaagaacaataagttcaaggtgttggttgaaagaatgaa |
200 |
Q |
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| T |
31691495 |
ctaacatgttcgctgctgactttgaggaccaggttcaacgatttgaaactttgattgatccaaagaacaatatgttcaaggtgttggttgaaagaatgaa |
31691396 |
T |
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| Q |
201 |
tgattttgtgttcttct-ccaagggatggaaagtcttgcgtgattttcacggtatcagtttgggtgctttggtttctctcgtcattgcatcacgaagata |
299 |
Q |
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| T |
31691395 |
tgattctgtgttcttctcccaagggatggaaagtcttgcgtgattttcacggtatcagtttgggtgctttggtttctctcgttattgcatcacgaagata |
31691296 |
T |
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| Q |
300 |
atagaaagattgaatccactaat |
322 |
Q |
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| T |
31691295 |
atagaaagattgaatccactaat |
31691273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 121 - 276
Target Start/End: Complemental strand, 43113275 - 43113120
Alignment:
| Q |
121 |
tttgaggaccaggttcaacgatttgaaactttgattgatccaaagaacaataagttcaaggtgttggttgaaagaatgaatgattttgtgttcttctcca |
220 |
Q |
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| T |
43113275 |
tttggggaccaagttcaacgatttgcaactttgattgatgcaaagagcaatcagttcgaggtgttggttgaaagaattgatgggtctgtatttttctcca |
43113176 |
T |
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| Q |
221 |
agggatggaaagtcttgcgtgattttcacggtatcagtttgggtgctttggtttct |
276 |
Q |
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| T |
43113175 |
agggatggaaatccttgcgtgatttttatgggatcagcttgggtgcttgggtttct |
43113120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 278
Target Start/End: Original strand, 28138400 - 28138557
Alignment:
| Q |
121 |
tttgaggaccaggttcaacgatttgaaactttgattgatccaaagaacaataagttcaaggtgttggttgaaagaatgaatgattttgtgttcttctcca |
220 |
Q |
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| T |
28138400 |
tttggggaccaagttcaacgatttgcgactttgattgatgcaaaaaggaatcagttcgaggtgttggttgaaagaattgatgggtcagtgtttttctcca |
28138499 |
T |
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| Q |
221 |
agggatggaaagtcttgcgtgattttcacggtatcagtttgggtgctttggtttctct |
278 |
Q |
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| T |
28138500 |
agggatggaaatccttgcgtgatttttatgggatcaacttgggtgcttgggtttctct |
28138557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 16727487 - 16727416
Alignment:
| Q |
207 |
tgtgttcttctccaagggatggaaagtcttgcgtgattttcacggtatcagtttgggtgctttggtttctct |
278 |
Q |
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| T |
16727487 |
tgtgtttttctccaagggatggaaatgcttgcgtgatttttatgggatcagcttgggtgcttgggtttctct |
16727416 |
T |
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