View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6851_low_1 (Length: 1124)
Name: NF6851_low_1
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6851_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 269 - 851
Target Start/End: Original strand, 13359764 - 13360344
Alignment:
| Q |
269 |
ttggttcgaaaaagtcatttttcttgttattgttgcatgaagttgttggtttttggacccgttctctgtcttgaggttagttcattcatcaacctattca |
368 |
Q |
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| T |
13359764 |
ttggttcgaaaaagtcatttttcttgttattattgcatgaagttgttggtttttggacccg--ctctgtcttgaggttagttcattcatcatcctattca |
13359861 |
T |
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| Q |
369 |
ccattcac-------tttgtgtggacttattcaattcagttttatgcaaggtaattaaa-tcggattggatcgacccggttggaccgggaatcggaccta |
460 |
Q |
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| T |
13359862 |
ccattcaccattcactttgtgtggacttattcaattcagttttatgcaaggtaattaaaatcggattggatcgacc-ggttggactgggaatcagaccta |
13359960 |
T |
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| Q |
461 |
tgtatggttttggttagtccataaaaccgtgtggattcagaactggaatctaaaccgtgaagccggtnnnnnnnngtggagcaaaccgggaaaaccaacg |
560 |
Q |
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| T |
13359961 |
tgtatggtct-gattagtccataaaaccgtgtggattcagaactgaaatctaaaccgtgaagccggtaaaaaaa-gtggagcaaaccgggaaaaccaacg |
13360058 |
T |
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| Q |
561 |
gttttggaggttacccagattggaccgtcttcacatttatattaagnnnnnnntacaatcgaactcccacactgtgttcgccgataacaccaaaagtgtt |
660 |
Q |
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| T |
13360059 |
gttttggagtttatccaggttagaccgtcttcacatttat--taagaaaaaaatacaatcgaacccccacactgtgttcgcgggtaacaccaaaagtgtt |
13360156 |
T |
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| Q |
661 |
tttgttatttctcattcaaagctttcaaagaaatcatcattgttagaaatagagcttgaaacaagatatgtaagagaaggggagaaggtgcaaatcatca |
760 |
Q |
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| T |
13360157 |
tttgttatttctcattcaaagctttcaaagaaatcatcattgttagaaataaagcttgaaacaagacatgtaagagaaggggagaaggtgcaaatcatca |
13360256 |
T |
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| Q |
761 |
acaagagaatgggttttgtgtgcttcttggaagagagagaacatgaactagaagaaagacaagacggaacttttaatttaattagtacaat |
851 |
Q |
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| T |
13360257 |
acaagagaatgggttttgtgtgcttcttggaagagagagaacatgaact---agaaagaaaagacagaacttttaatttaatcagtacaat |
13360344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 13359461 - 13359724
Alignment:
| Q |
11 |
gtttggtgttgtggtcgtgttttcgttttaaatcagagctactggtggtgcttgaggcagcttagttgtttctccggtgggttgcaagattggtgttggt |
110 |
Q |
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| T |
13359461 |
gtttggtgttgtggtcgtgtttttgttttaaatcagagctattggtggtgcttgaggcagcttagttgtttctccgatgggttgtaagattggtgttgct |
13359560 |
T |
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| Q |
111 |
caaatggtttctggcctatgttatggtttcaaaaagatttgttgttgttgctacaagcatagatctattgaaatatgcaagtttctaaatttaaggtttg |
210 |
Q |
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| T |
13359561 |
caaatggtttttggcctatattatggtttcaaaaagatttgttgttgttgctacaagcatagatctattgagatatgcacgtttctaaatttaaggtttg |
13359660 |
T |
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| Q |
211 |
tctcatctgtgtcagtgccagctaaatatatgtaccaatctctatgatagattttgaattggtt |
274 |
Q |
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| T |
13359661 |
tctcatttgagtcagtgccaactaaatacatgtaccaatccctatgatagattttgaattggtt |
13359724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 3e-79
Query Start/End: Original strand, 847 - 1108
Target Start/End: Original strand, 13363702 - 13363960
Alignment:
| Q |
847 |
acaataaaaattgtataaacctttatgtcacccagattttcttgttttgtaannnnnnnctttctttctatcaatatattattatgagtatgcatgtaac |
946 |
Q |
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| T |
13363702 |
acaatgaaaattgtataaacctctatgtcaaccagattttcttcttttgtaatttttttttttctttctatcaatatattattatgagtatgcatgtaac |
13363801 |
T |
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| Q |
947 |
tcagtcttatattgtaggcagcctaacataattgtgatgtctatgcaacatatctaggtgtatgttaatactcataacttatctnnnnnnnnttaatcta |
1046 |
Q |
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| T |
13363802 |
tcagtcttatattgtagggagcctaacataattgtgttgtctatgcaac--atctcggtgtatgttaatactcttaaattatctaaaaaaa--taatcta |
13363897 |
T |
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| Q |
1047 |
attagta-tttcattatttctatattttaaaacttaatagatcacctttaatctatttgtttt |
1108 |
Q |
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| T |
13363898 |
attagtattttcattatttctatattttaaaacttaatagatcacctttaatctatttgtttt |
13363960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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