View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6851_low_11 (Length: 299)
Name: NF6851_low_11
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6851_low_11 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 29965018 - 29965294
Alignment:
| Q |
4 |
gtcgaagaatatgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaat |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
29965018 |
gtcgaagagaatgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccctgttggacccttattacttcctcgtgaat |
29965117 |
T |
|
| Q |
104 |
gtagagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcaga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
29965118 |
gtagagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatatttggttaga |
29965217 |
T |
|
| Q |
204 |
aaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctatac |
280 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29965218 |
aaacgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacagcaatttgaatctatac |
29965294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 30009780 - 30009504
Alignment:
| Q |
4 |
gtcgaagaatatgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaat |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
30009780 |
gtcgaagagaatgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccctgttggacccttattacttcctcgtgaat |
30009681 |
T |
|
| Q |
104 |
gtagagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcaga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
30009680 |
gtagagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatatttggttaga |
30009581 |
T |
|
| Q |
204 |
aaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctatac |
280 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30009580 |
aaacgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacagcaatttgaatctatac |
30009504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 30007314 - 30007574
Alignment:
| Q |
20 |
tgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataac |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| || ||||||||||| || ||||||||||||||| | ||||||||||||||||| |||||||| |
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|
| T |
30007314 |
tgaagaagtttaattacttagatatggttgttgatgaaaccttaagactttatcctgttggacccttattaatccctcgtgaatgtagagagagcataac |
30007413 |
T |
|
| Q |
120 |
aattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttt |
219 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||| |
|
|
| T |
30007414 |
aattgatggatattttataacgaaaaagactcgagttatagtaaatgcatgggctattgggagagattgtaacgtttggtcagaaaatgctgatgaattt |
30007513 |
T |
|
| Q |
220 |
tatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctatac |
280 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
30007514 |
tacccagagagatttattgacaagaaaatgaattatcaaggacatgagtttgaatctatac |
30007574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 33 - 276
Target Start/End: Original strand, 29953779 - 29954022
Alignment:
| Q |
33 |
ttacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataacaattgatggatat |
132 |
Q |
| |
|
||||||||| ||||||||| |||| || |||||||||||||| |||| |||||||||||| ||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
29953779 |
ttacttagagatggtggttcatgaaactttaagactttaccctgttgcacccttattactccctcgtgaatgtagagagagtgtaacaattgatggatat |
29953878 |
T |
|
| Q |
133 |
tttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttttatccagagagat |
232 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
29953879 |
tttataaaggaaaagactcgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgccgaagaattttacccagagagat |
29953978 |
T |
|
| Q |
233 |
ttagtgataagaaaatgaattatcaaggacaagaatttgaatct |
276 |
Q |
| |
|
| | || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29953979 |
tcattggcaagaaaatgaattatcaaggacaagagtttgaatct |
29954022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 22 - 280
Target Start/End: Complemental strand, 30043682 - 30043424
Alignment:
| Q |
22 |
aagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataacaa |
121 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||| ||| || | |||||||||| |||||| |||| ||||| |
|
|
| T |
30043682 |
aagaagttgaattatttagatatggtggttgatgagaccttaagactttaccccgtagcaccgttactagtccctcgtgaatctagagagagcacaacaa |
30043583 |
T |
|
| Q |
122 |
ttgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagtttta |
221 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| | || ||||| |
|
|
| T |
30043582 |
ttgatggttattttataaaggaaaagacacgacttatagtaaatgcatgggcaatagggagagatcctaatgtttggtcagaaaatgctaaagaatttta |
30043483 |
T |
|
| Q |
222 |
tccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctatac |
280 |
Q |
| |
|
|||||||||||| || || ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
30043482 |
cccagagagatttgtagagaaaaaaatgaattatcttggacaagagtttgaatctatac |
30043424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 29995525 - 29995784
Alignment:
| Q |
20 |
tgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataac |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||| ||| || | |||||||| | |||||| |||| || |
|
|
| T |
29995525 |
tgaagaagttgaattatttagatatggtggttgatgagaccttaagactttaccctgttgcaccattactagtccctcgtgagtctagagagagcacaat |
29995624 |
T |
|
| Q |
120 |
aattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttt |
219 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||||||||||| || || ||| |
|
|
| T |
29995625 |
aattgatggttattttataaaggaaaagacacgacttatagtaaatgcatgggcaatagggagagatcctaatgtttggtcagaaaatgccgaagaattt |
29995724 |
T |
|
| Q |
220 |
tatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctatac |
280 |
Q |
| |
|
|||||||||||||||| ||| || ||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
29995725 |
tatccagagagatttattgagaa-aaactgaattatctcggacaagagtttgaatctatac |
29995784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 29946808 - 29947065
Alignment:
| Q |
23 |
agaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataacaat |
122 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||| || |||||||||||||| |||| |||||| ||||| ||||||||||||||||| || |||||||| |
|
|
| T |
29946808 |
agaagttaagttacttagatatggtggttcatgaaactttaagactttaccctgttgcacccttgttactccctcgtgaatgtagagagagtataacaat |
29946907 |
T |
|
| Q |
123 |
tgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttttat |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| ||| || ||| || |
|
|
| T |
29946908 |
tgatggatattttataatggaaaagacacgagttatagtaaatgcatgggctatagagagagattctagtgtttggtcagaaaattatgaagaatttcat |
29947007 |
T |
|
| Q |
223 |
ccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctatac |
280 |
Q |
| |
|
||||| ||||||| ||| | ||||||||||||| ||||||| | ||| ||||||||| |
|
|
| T |
29947008 |
ccagaaagatttattgacatgaaaatgaattatgaaggacataagtttaaatctatac |
29947065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 30001185 - 30001458
Alignment:
| Q |
7 |
gaagaatatgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgta |
106 |
Q |
| |
|
|||||| | ||||||||||| || |||||| ||||||||||||||||||| || ||||||||||| || |||| ||| |||||| | ||||||||||||| |
|
|
| T |
30001185 |
gaagaaaaggatttgaagaattttaattacctagatatggtggttgatgaaaccttaagactttatcctgttgcacctttattaatccctcgtgaatgta |
30001284 |
T |
|
| Q |
107 |
gagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaa |
206 |
Q |
| |
|
|||| | |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||| |
|
|
| T |
30001285 |
gagagaacataacaattgatgattattctataaaagaaaagacacgagttatagtaaatgcatgggcaattgggagagatcctgatgtttggtcagaaaa |
30001384 |
T |
|
| Q |
207 |
tgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctatac |
280 |
Q |
| |
|
|||||| || ||||| ||||||||||||| ||| || ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
30001385 |
tgctgaagaattttacccagagagatttattgagaaaaaaatgaattatctcggacaagagtttgaatctatac |
30001458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 30068205 - 30067948
Alignment:
| Q |
16 |
gatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||| || || |||| ||||||| || | |||| | |||||||||| | || |
|
|
| T |
30068205 |
gatttgaagaagttgaattacttagatatggtggttgatgaaaccttaagactgtatcctgttgcacccttactagtccctcctaaatgtagagagaaca |
30068106 |
T |
|
| Q |
116 |
taacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatga |
215 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||| || |
|
|
| T |
30068105 |
taacaattgatgattattttataaaggaaaagacgagaattatggtaaatgcatgggcaatagggagagatcctaatgtttggtcagaaaatgctgaaga |
30068006 |
T |
|
| Q |
216 |
gttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaa |
273 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
30068005 |
attttatccaaagagatttattgaaaagaaaatgaattatcaaagacaagagtttgaa |
30067948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 29944820 - 29945086
Alignment:
| Q |
7 |
gaagaatatgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgta |
106 |
Q |
| |
|
|||||| | ||||||||||| || |||||||||||||||||||||||||| || ||||||||| | || ||| |||||| ||||| ||||||||||||| |
|
|
| T |
29944820 |
gaagaaaaggatttgaagaattttaattacttagatatggtggttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgta |
29944919 |
T |
|
| Q |
107 |
gagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaa |
206 |
Q |
| |
|
|||| | ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |||| ||||||| | ||||||||||||||||| |
|
|
| T |
29944920 |
gagagaacataacaattgatggttattttgtaaaggaaaagacacgagttatagtaaatgcatttacaatagcgagagatcctaatgtttggtcagaaaa |
29945019 |
T |
|
| Q |
207 |
tgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaa |
273 |
Q |
| |
|
|||||| || |||| ||||||||| |||| | |||||||| |||||||| |||||||||| |||||| |
|
|
| T |
29945020 |
tgctgaagaattttgtccagagaggtttattaataagaaattgaattatgaaggacaagagtttgaa |
29945086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 31890612 - 31890703
Alignment:
| Q |
143 |
aaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttttatccagagagattt |
234 |
Q |
| |
|
|||||||| || || || ||||||||||| | ||||||||||| | ||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
31890612 |
aaaagacaagaattttaataaatgcatggacaatagggagagacactaatgtttggtcggataatgctgagacgttttatccagagagattt |
31890703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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