View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6851_low_13 (Length: 266)
Name: NF6851_low_13
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6851_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 38320555 - 38320319
Alignment:
| Q |
13 |
agatcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataa |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320555 |
agatcaacagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataa |
38320456 |
T |
|
| Q |
113 |
catttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcaa-aaaatcaaagggaaaatcatttgaaaggat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
38320455 |
catttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcaaaaaaatcaaagggaaaatcatttgaaaggat |
38320356 |
T |
|
| Q |
212 |
catagaagcacaccttttaaccaaccataattgatct |
248 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38320355 |
catagaagcacaccttttaactaaccataattgatct |
38320319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 38305727 - 38305518
Alignment:
| Q |
15 |
atcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataaca |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||| ||||| ||||||||||||| ||||||| |
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| T |
38305727 |
atcaaaagttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttctctttcatgtataaatcagagacataagcctcaataaca |
38305628 |
T |
|
| Q |
115 |
tttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcaaaaaa-tcaaagggaaaatcatttgaaaggatca |
213 |
Q |
| |
|
| || |||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38305627 |
tctacaggaggcaaaacaatatttggatttaagaccttcatgaagttcctcatcccctcgcgctcaaaaaactcaaagggaaaatcatttgaaaggatca |
38305528 |
T |
|
| Q |
214 |
tagaagcaca |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
38305527 |
tagaagcaca |
38305518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 38316455 - 38316249
Alignment:
| Q |
15 |
atcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataaca |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||| ||| |||||||||| ||||||| |
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|
| T |
38316455 |
atcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataaca |
38316356 |
T |
|
| Q |
115 |
tttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgct-caaaaaatcaaagggaaaatcatttgaaaggatca |
213 |
Q |
| |
|
||| | ||||| |||||||||||||||||||||| || || | || ||||| ||||| ||| |||||||| |||||| ||||||| || |||||||| |
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|
| T |
38316355 |
tttgtcggaggtataacagcatttggatttaagaactcagtgtacttcctcattacctcgagctccaaaaaattaaagggcaaatcatgtgcaaggatca |
38316256 |
T |
|
| Q |
214 |
tagaagc |
220 |
Q |
| |
|
||||||| |
|
|
| T |
38316255 |
tagaagc |
38316249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 38325300 - 38325091
Alignment:
| Q |
15 |
atcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataaca |
114 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| | ||||||||||| ||||||| |
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|
| T |
38325300 |
atcaaaagttaaagataccctattaggaatggtagccaattgttgtttaagcttagatttctctttcatgtacaaatgagtgacataagcctcaataaca |
38325201 |
T |
|
| Q |
115 |
tttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgct-caaaaaatcaaagggaaaatcatttgaaaggatca |
213 |
Q |
| |
|
||| ||||||| |||||||||||| ||||||| || || | | ||||| |||||| ||| ||||||||||||||| |||||| || |||||||| |
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|
| T |
38325200 |
tttgtaggaggtataacagcatttcgatttaaagtctcagtgtacctcctcattccctcgtgctccaaaaaatcaaagggtaaatcaagtgcaaggatca |
38325101 |
T |
|
| Q |
214 |
tagaagcaca |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
38325100 |
tagaagcaca |
38325091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 38313046 - 38312910
Alignment:
| Q |
15 |
atcaacagttaaagatatcctatt----aggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaat |
110 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||| || |
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|
| T |
38313046 |
atcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctgattcgtgtacaaatcggagacataagcctcaag |
38312947 |
T |
|
| Q |
111 |
aacatttataggaggcataacagcatttggatttaag |
147 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
38312946 |
aacatttgaaggaggcataacaacatttggatttaag |
38312910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 38299810 - 38299730
Alignment:
| Q |
13 |
agatcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatcc |
93 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| | ||||||| ||||||||| ||| |||||||||||| |
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|
| T |
38299810 |
agatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcc |
38299730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 38308453 - 38308385
Alignment:
| Q |
22 |
gttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaa |
90 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| || ||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
38308453 |
gttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 38850890 - 38851099
Alignment:
| Q |
15 |
atcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataaca |
114 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||| || || ||||| | |||||| |
|
|
| T |
38850890 |
atcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataaca |
38850989 |
T |
|
| Q |
115 |
tttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctc-aaaaaatcaaagggaaaatcatttgaaaggatca |
213 |
Q |
| |
|
||| ||||||| ||| | |||||||||||||| || | | || ||||| |||||| |||| ||||||| |||||| ||||||| || ||||||| |
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|
| T |
38850990 |
tttctaggaggtataggaatatttggatttaagaactcggagtacttcctcattccctcgagctcgaaaaaatgaaagggcaaatcatgtgcaaggatcg |
38851089 |
T |
|
| Q |
214 |
tagaagcaca |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
38851090 |
tagaagcaca |
38851099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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