View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6851_low_2 (Length: 858)
Name: NF6851_low_2
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6851_low_2 |
 | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 441 - 843
Target Start/End: Complemental strand, 22820487 - 22820085
Alignment:
| Q |
441 |
caactatgattgattattgttagtggctatggattgagagattaaatgtgattgattgcgctaacaatttatttgatttgaattaatcatctgttttcag |
540 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22820487 |
caactatgattgattactgttagtggctatggattgagagattaaatgtgattgattgcggtaacaatttatttgatttgaatgaatcatctgttttcag |
22820388 |
T |
|
| Q |
541 |
ttgtagctgattaggtattggtaaaatagtgttttatagccgatgatagtgtcaaaagatgttagctttattattgttcttatcgtagctgttgttataa |
640 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
22820387 |
ttgtagctgattaggtattggtaaaatagtgttttatagccgatgatagtgtcaaaagatgttagctttatcattgttcttatcgtagttgttgttataa |
22820288 |
T |
|
| Q |
641 |
atgaagcatgaactggacatgacacacactgacacatagaaaggagtttcagaaaataatcatagagatagttatgtatatcgatgcttaacatcagaca |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22820287 |
atgaagcatgaactggacatgacacacactgacacatagaaaggagtttcagaaaataatcatagagatagttatgtatatcgatgcttaacatcagaca |
22820188 |
T |
|
| Q |
741 |
gactacctgaagattactattttggcggcattccacatagatttatatcttcggctaacaacataactaactttagagcagaagcttaactcggttcttt |
840 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22820187 |
gactacctgaagattactattttggcggcattcctcatagatttatatcttcggctaacaacataactaactttagagcaaaagcttaactcggttcttt |
22820088 |
T |
|
| Q |
841 |
ctg |
843 |
Q |
| |
|
||| |
|
|
| T |
22820087 |
ctg |
22820085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 22820915 - 22820563
Alignment:
| Q |
14 |
tttggtgtttgcaaggctgaccggagtactgttttcttcatcatggagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22820915 |
tttggtgtttgcaaggctgaccggagtactgttttcttcatcatggagttaggattaaatgacattaaaatgtcaaagttaatttgattctaaattttag |
22820816 |
T |
|
| Q |
114 |
ccattgattgattgtaatcaaatgatgatattgattaagttaaggtggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22820815 |
ccattgattgattgtaatcaaatgatgatattgattaagttaaggtggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctc |
22820716 |
T |
|
| Q |
214 |
atttgctcccatctccacgagttagtgtgttttcgatttgacctccaatctccttagttatctnnnnnnntgatcaaggcgtgatgtttggaaaaaggca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
22820715 |
atttgctcccatctccacgagttagtgtgtttttgatttgacctccaatctccttagttatctaaaaaaatgatcaagacgtgatgtttggaaaaaggca |
22820616 |
T |
|
| Q |
314 |
aaaacattatgttatacatgaccttgatcatagctctataacaacaaatacta |
366 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22820615 |
aaaacattatgttatacatgaccttgattatagctctataacaacaaatacta |
22820563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 18892391 - 18892514
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
18892391 |
gagttaggattaaatgacattaatgtgtcaaagttaatttgataccaaattttagcaattgatttattttaatcgaatgatgatattgattcagttaagg |
18892490 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgcc |
182 |
Q |
| |
|
|||||| |||| ||||||||||| |
|
|
| T |
18892491 |
aggtcacatgatcaccatgctgcc |
18892514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 59 - 274
Target Start/End: Original strand, 23277 - 23492
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23277 |
gagttaggattaaatgacattaaaatgtcaaagttaatttcatgccaaattttagccattgattgattttaatcaaatgatgatattgattaagttaagg |
23376 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctcatttgctcccatctccacgagttagtgtgttttcgatttgacctc |
258 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23377 |
tggtcacgtgatgaccatgttgccgtcaagtctaagttttggtcctctttctctcatttgctcccatctccatgagttagtgtgttttcgatttgacctc |
23476 |
T |
|
| Q |
259 |
caatctccttagttat |
274 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
23477 |
ccatctcctcagttat |
23492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 63 - 276
Target Start/End: Original strand, 13913937 - 13914150
Alignment:
| Q |
63 |
taggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaaggtggt |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13913937 |
taggattaaatgacattaaaatgtcaaagttaatttgatgtcaaattctagccattgattgattttaatcaaatgatgatattgattaagttaaggtggt |
13914036 |
T |
|
| Q |
163 |
cacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctcatttgctcccatctccacgagttagtgtgttttcgatttgacctccaat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
13914037 |
cacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttttctcatttgctcctatctccatgagttagtgtgttttcgatttgacctctcat |
13914136 |
T |
|
| Q |
263 |
ctccttagttatct |
276 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
13914137 |
ctcctcagttatct |
13914150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 23593 - 23667
Alignment:
| Q |
287 |
tcaaggcgtgatgtttggaaaaaggcaaaaacattatgttatacatgaccttgatcatagctctataacaacaaa |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23593 |
tcaaggcgtgatgtttggaaaaaggcaaaaacattatgttatacatgaccttgatcatagctctataacaacaaa |
23667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 13914249 - 13914324
Alignment:
| Q |
287 |
tcaaggcgtgatgtttggaaaa-aggcaaaaacattatgttatacatgaccttgatcatagctctataacaacaaa |
361 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13914249 |
tcaaggcgtgaagtttggaaaaaaggcaaaaacattatgttatacatgaccttgatcatagctctataacaacaaa |
13914324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 4e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 59 - 276
Target Start/End: Complemental strand, 45050414 - 45050199
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
45050414 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgatgccaaattt-agtcattgattgattttaatcaaatgat-atattgattaagttaagg |
45050317 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctcatttgctcccatctccacgagttagtgtgttttcgatttgacctc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45050316 |
tggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctcatttgctcctatctccatgagttagtgtgttttcgatttgacctc |
45050217 |
T |
|
| Q |
259 |
caatctccttagttatct |
276 |
Q |
| |
|
| ||||||| |||||||| |
|
|
| T |
45050216 |
ccatctcctcagttatct |
45050199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 45050100 - 45050026
Alignment:
| Q |
287 |
tcaaggcgtgatgtttggaaaaaggcaaaaacattatgttatacatgaccttgatcatagctctataacaacaaa |
361 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45050100 |
tcaaggcgtgatgtttgaaaaaaggcaaaaacattatgttatacatgaccttgatcatagctctataacaacaaa |
45050026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 170; Significance: 9e-91; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 59 - 276
Target Start/End: Original strand, 16105 - 16322
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16105 |
gagttaagattaaatgacattaaaatgtcaaagttaatttgatgccaaattttagtcattgattgattttaatcaaatgatgatattgattaagttaagg |
16204 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctcatttgctcccatctccacgagttagtgtgttttcgatttgacctc |
258 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
16205 |
tggtcatgtgatgaccatgctgccgtcaagtctaagttttggtcatctttctctcatttgctctcatctccatgagttggtgtgttttcgatttgatctc |
16304 |
T |
|
| Q |
259 |
caatctccttagttatct |
276 |
Q |
| |
|
| ||||||| |||||||| |
|
|
| T |
16305 |
ccatctcctcagttatct |
16322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 3e-81; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 59 - 276
Target Start/End: Complemental strand, 325659 - 325443
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
325659 |
gagttgggattaaatgacattaaaatgtcaaagttaatttgataccaaattttagcc-ttgattgattttaattaaatgatgatattgattaagttaagg |
325561 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctcatttgctcccatctccacgagttagtgtgttttcgatttgacctc |
258 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
325560 |
tggtcacgcgatgaccatgttgccgtcaagtctaagttttggtcatttttctctcatttgctcccatttccatgagttagtgtgttttcgatatgacctc |
325461 |
T |
|
| Q |
259 |
caatctccttagttatct |
276 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
325460 |
tcatctcctcagttatct |
325443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 14236539 - 14236414
Alignment:
| Q |
150 |
aagttaaggtggtcacgtgatgaccatgctgccgtcaagtctaagttttggtcctctttctctcatttgctcccatctccacgagttagtgtgttttcga |
249 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14236539 |
aagttaagatggtcacgtgatgaccatgctgccgtcaagtctaagttt-ggtcatctttctctcatttgctcccatctccatgagttagtgtgttttcga |
14236441 |
T |
|
| Q |
250 |
tttgacctccaatctccttagttatct |
276 |
Q |
| |
|
||| |||||| ||||||| |||||||| |
|
|
| T |
14236440 |
tttcacctcccatctcctcagttatct |
14236414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 24729197 - 24729326
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||| | |||||| |
|
|
| T |
24729197 |
gagttaggattaaatgacattaatgtgtcaaagttaatttgataccaaattttagcaattgatttattttaatcaaatgatgatattgattcatttaagg |
24729296 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgccgtcaag |
188 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| |
|
|
| T |
24729297 |
aggtcacatgatcaccatgctgccatcaag |
24729326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 22504203 - 22504332
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
22504203 |
gagttaggattaaatgacattaatgtgtcaaagttaatttgataccaaattttagcaattgatttattttaatcgaatgatgatattgattcagttaagg |
22504302 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgccgtcaag |
188 |
Q |
| |
|
|||||| |||| |||||| |||| ||||| |
|
|
| T |
22504303 |
aggtcacatgatcaccatgttgccatcaag |
22504332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 14237177 - 14237085
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaa |
151 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14237177 |
gagttaggattaaatgacatttaaatatcaaagttaatttgatgccaaattttagccattgattgattttaatcaaatgatgatattgattaa |
14237085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 5274030 - 5274159
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| ||| ||||| |||||||||||||||| |||||| | |
|
|
| T |
5274030 |
gagttaggattaaatgacattaatgtgtaaaagttaatttgataccaaattttagcaattgatttattttaatcgaatgatgatattgattcagttaatg |
5274129 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgccgtcaag |
188 |
Q |
| |
|
|||||| |||| | ||||||||| ||||| |
|
|
| T |
5274130 |
aggtcacatgatcaacatgctgccatcaag |
5274159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 21039849 - 21039720
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||| ||| |||| ||| |||||||||||| |||||||| |
|
|
| T |
21039849 |
gagttaggattaaatgacattaatatgtcaaagttaatttgatacaaaattttagcaattgatttattttaattcaataatgatattgattcagttaagg |
21039750 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgccgtcaag |
188 |
Q |
| |
|
||||| |||| | ||||||||| ||||| |
|
|
| T |
21039749 |
aggtcatatgatcatcatgctgccatcaag |
21039720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 689 - 843
Target Start/End: Original strand, 41825985 - 41826144
Alignment:
| Q |
689 |
tcagaaaataatcatagagat---agttatgtatatcgatgcttaacatcagacagactacctgaagattactattttggcggcattccacatagattta |
785 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| |||||||||||| |||||| |||||||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
41825985 |
tcagaaaataatcatacagattatagttatgtatattgatgcttaacatgagacagtctacctgaagattactatttccgcagcattcctcatagattta |
41826084 |
T |
|
| Q |
786 |
tatcttcggctaacaacataactaactttagagcagaagcttaactc--ggttctttctg |
843 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
41826085 |
tatcttcggctaacaacataactaactttagagcagaagcctaactcttggttctttctg |
41826144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 728 - 832
Target Start/End: Original strand, 41819380 - 41819484
Alignment:
| Q |
728 |
ttaacatcagacagactacctgaagattactattttggcggcattccacatagatttatatcttcggctaacaacataactaactttagagcagaagctt |
827 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||| ||||| ||| ||||||| | |
|
|
| T |
41819380 |
ttaacatgagacagacaacctgaagattactatttctgcggcattcctcatagatttgtatcttcggctaagaacataaataactctagtacagaagcct |
41819479 |
T |
|
| Q |
828 |
aactc |
832 |
Q |
| |
|
||||| |
|
|
| T |
41819480 |
aactc |
41819484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 61 - 275
Target Start/End: Complemental strand, 10897126 - 10896896
Alignment:
| Q |
61 |
gttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaa----gttaa |
156 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
10897126 |
gttagaattaaatgacattaaaatatctaagttaatttgatgccaaattttagtcattgattgattttaatacaatgatgatattgattaagttagttaa |
10897027 |
T |
|
| Q |
157 |
ggtggtcacgtgatgaccatgctgccgtcaagtctaagttttggtc---------------ctctttctctcatttgctcccatctccacgagttagtgt |
241 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
10897026 |
ggtggtcacgtgatgacaa---tgcagtcaagtctaagttttggtctcccagtgatattttctctttctctcatatgctcccatctccatgagttagtga |
10896930 |
T |
|
| Q |
242 |
gttttcgatttgacctccaatctccttagttatc |
275 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| |
|
|
| T |
10896929 |
gttttcgatttgacctcccatctcctcagttatc |
10896896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 10896786 - 10896731
Alignment:
| Q |
295 |
tgatgtttggaaaaaggcaaaaacattatgttatacatgaccttgatcatagctct |
350 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
10896786 |
tgatgtttggaaaaaggcaaaaactttatcttatacatgaccttgatcatagctct |
10896731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 165620 - 165491
Alignment:
| Q |
59 |
gagttaggattaaatgacattaaaatgtcaaagttaatttgattccaaattttagccattgattgattgtaatcaaatgatgatattgattaagttaagg |
158 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
165620 |
gagttaggattaaatgacattaatgtgtcaaagttaatttgataccaaattttagcaattgatttattttaatcgaatgatgatattgattcagttaagg |
165521 |
T |
|
| Q |
159 |
tggtcacgtgatgaccatgctgccgtcaag |
188 |
Q |
| |
|
|||||| | || ||||| ||||| ||||| |
|
|
| T |
165520 |
aggtcacataatcaccatactgccatcaag |
165491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University