View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6851_low_3 (Length: 705)

Name: NF6851_low_3
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6851_low_3
NF6851_low_3
[»] chr5 (32 HSPs)
chr5 (123-353)||(26312302-26312524)
chr5 (346-512)||(26311644-26311810)
chr5 (555-667)||(26311434-26311546)
chr5 (126-207)||(26288247-26288328)
chr5 (18-89)||(26312819-26312890)
chr5 (42-124)||(21542056-21542138)
chr5 (33-127)||(39698564-39698658)
chr5 (221-286)||(26319932-26319997)
chr5 (33-124)||(21522776-21522867)
chr5 (33-124)||(21533342-21533433)
chr5 (33-124)||(18592099-18592190)
chr5 (32-127)||(19579724-19579819)
chr5 (33-84)||(21576698-21576749)
chr5 (580-627)||(26340920-26340967)
chr5 (42-127)||(21814284-21814369)
chr5 (25-86)||(27932288-27932349)
chr5 (40-127)||(7677728-7677815)
chr5 (33-88)||(15382536-15382591)
chr5 (33-88)||(21191009-21191064)
chr5 (33-120)||(32766885-32766972)
chr5 (33-127)||(6401521-6401615)
chr5 (33-85)||(31084382-31084434)
chr5 (33-85)||(43001859-43001911)
chr5 (40-88)||(43564932-43564980)
chr5 (33-72)||(17088358-17088397)
chr5 (33-88)||(30098991-30099046)
chr5 (33-88)||(39268551-39268606)
chr5 (33-78)||(21194076-21194121)
chr5 (40-85)||(30098391-30098436)
chr5 (25-78)||(30183621-30183674)
chr5 (33-73)||(14873588-14873628)
chr5 (454-506)||(26341038-26341090)
[»] chr3 (27 HSPs)
chr3 (33-127)||(4987233-4987327)
chr3 (44-127)||(14832122-14832205)
chr3 (33-88)||(20503516-20503571)
chr3 (33-88)||(40993288-40993343)
chr3 (40-127)||(41961599-41961686)
chr3 (33-88)||(55401126-55401181)
chr3 (33-127)||(34185065-34185159)
chr3 (25-86)||(7171554-7171615)
chr3 (25-122)||(8039769-8039866)
chr3 (35-88)||(10955003-10955056)
chr3 (42-127)||(14209136-14209221)
chr3 (40-127)||(14216915-14217002)
chr3 (40-127)||(14223044-14223131)
chr3 (33-127)||(25064932-25065024)
chr3 (33-78)||(15999963-16000008)
chr3 (33-78)||(27505312-27505357)
chr3 (25-85)||(10690197-10690257)
chr3 (27-127)||(28812538-28812638)
chr3 (33-88)||(35222989-35223044)
chr3 (33-127)||(15796236-15796330)
chr3 (24-78)||(16192666-16192720)
chr3 (33-71)||(40052380-40052418)
chr3 (28-69)||(21720842-21720883)
chr3 (40-89)||(26492165-26492214)
chr3 (33-78)||(28918064-28918109)
chr3 (33-85)||(3631738-3631790)
chr3 (25-73)||(17005553-17005601)
[»] chr1 (36 HSPs)
chr1 (33-127)||(47989520-47989614)
chr1 (25-85)||(1486649-1486709)
chr1 (49-125)||(27471524-27471600)
chr1 (33-127)||(6427487-6427581)
chr1 (33-127)||(9828067-9828161)
chr1 (26-127)||(6332693-6332794)
chr1 (42-127)||(32461415-32461499)
chr1 (40-120)||(40917779-40917859)
chr1 (33-124)||(6612113-6612204)
chr1 (40-127)||(18556405-18556492)
chr1 (42-85)||(31015091-31015134)
chr1 (33-88)||(37598882-37598937)
chr1 (34-89)||(40181921-40181976)
chr1 (33-127)||(5944306-5944400)
chr1 (33-127)||(25934639-25934733)
chr1 (25-74)||(9690218-9690267)
chr1 (28-73)||(16164252-16164297)
chr1 (25-78)||(18190053-18190106)
chr1 (43-88)||(29163344-29163389)
chr1 (33-127)||(25361909-25361999)
chr1 (40-88)||(46348343-46348391)
chr1 (33-88)||(5898219-5898274)
chr1 (39-78)||(6427596-6427635)
chr1 (33-88)||(22515840-22515895)
chr1 (33-88)||(40258886-40258941)
chr1 (33-88)||(42359402-42359457)
chr1 (34-88)||(1815308-1815362)
chr1 (33-127)||(31694652-31694746)
chr1 (42-88)||(51410076-51410122)
chr1 (33-86)||(16297234-16297287)
chr1 (33-70)||(27965953-27965990)
chr1 (29-70)||(28268134-28268175)
chr1 (70-127)||(44482253-44482310)
chr1 (33-69)||(15765828-15765864)
chr1 (64-124)||(34315738-34315798)
chr1 (25-85)||(41597415-41597475)
[»] chr7 (23 HSPs)
chr7 (34-127)||(24339665-24339758)
chr7 (42-127)||(11831455-11831540)
chr7 (43-120)||(25822685-25822762)
chr7 (33-78)||(43027417-43027462)
chr7 (33-85)||(5409784-5409836)
chr7 (43-127)||(21560526-21560610)
chr7 (28-85)||(3294252-3294309)
chr7 (40-88)||(598259-598307)
chr7 (25-84)||(21864863-21864922)
chr7 (33-127)||(26033403-26033497)
chr7 (33-127)||(32308143-32308237)
chr7 (33-85)||(32093967-32094020)
chr7 (33-85)||(9778559-9778611)
chr7 (33-85)||(13770750-13770802)
chr7 (40-88)||(21880203-21880251)
chr7 (33-88)||(15680860-15680915)
chr7 (25-88)||(18212978-18213041)
chr7 (33-88)||(32287416-32287471)
chr7 (25-63)||(38134340-38134378)
chr7 (42-87)||(8234198-8234243)
chr7 (33-78)||(29763142-29763187)
chr7 (25-69)||(24105748-24105792)
chr7 (25-69)||(38804494-38804538)
[»] chr6 (26 HSPs)
chr6 (40-127)||(16766720-16766807)
chr6 (35-127)||(8365463-8365555)
chr6 (33-88)||(34595185-34595240)
chr6 (25-85)||(3209453-3209513)
chr6 (33-85)||(17327603-17327655)
chr6 (33-88)||(28152149-28152204)
chr6 (33-127)||(8714003-8714097)
chr6 (34-127)||(5970051-5970144)
chr6 (34-127)||(9107313-9107406)
chr6 (42-127)||(9522914-9522999)
chr6 (42-127)||(16488541-16488626)
chr6 (25-85)||(12696383-12696443)
chr6 (33-127)||(10339067-10339162)
chr6 (25-88)||(28715346-28715409)
chr6 (25-88)||(33001234-33001297)
chr6 (33-127)||(7248381-7248475)
chr6 (33-127)||(18367859-18367953)
chr6 (33-127)||(31384943-31385036)
chr6 (25-78)||(23130406-23130459)
chr6 (25-88)||(24645532-24645595)
chr6 (33-88)||(32978852-32978907)
chr6 (44-78)||(9658940-9658974)
chr6 (33-87)||(17841542-17841596)
chr6 (33-78)||(8776921-8776966)
chr6 (43-124)||(17435225-17435306)
chr6 (25-69)||(26178623-26178667)
[»] scaffold0623 (1 HSPs)
scaffold0623 (33-127)||(5938-6032)
[»] chr8 (26 HSPs)
chr8 (25-127)||(8343339-8343441)
chr8 (33-127)||(22651999-22652093)
chr8 (33-127)||(26902117-26902211)
chr8 (33-128)||(29447466-29447561)
chr8 (33-127)||(29447052-29447146)
chr8 (33-127)||(29510246-29510340)
chr8 (33-78)||(22943302-22943347)
chr8 (33-98)||(34450974-34451039)
chr8 (25-86)||(36450699-36450760)
chr8 (44-88)||(5813643-5813687)
chr8 (25-85)||(16641914-16641974)
chr8 (40-127)||(15816078-15816165)
chr8 (33-88)||(24205761-24205816)
chr8 (33-88)||(33405337-33405392)
chr8 (33-127)||(11927028-11927122)
chr8 (33-127)||(11944688-11944782)
chr8 (51-127)||(2572016-2572092)
chr8 (33-85)||(3025605-3025657)
chr8 (25-69)||(8343037-8343081)
chr8 (33-88)||(14134750-14134805)
chr8 (33-88)||(40332242-40332297)
chr8 (42-88)||(3951498-3951544)
chr8 (33-127)||(11803282-11803376)
chr8 (33-85)||(126300-126352)
chr8 (43-123)||(12570687-12570766)
chr8 (25-85)||(24858070-24858130)
[»] chr4 (35 HSPs)
chr4 (33-88)||(23292939-23292994)
chr4 (33-127)||(19482691-19482785)
chr4 (33-127)||(30982820-30982914)
chr4 (33-127)||(5414114-5414208)
chr4 (33-127)||(36635347-36635436)
chr4 (42-127)||(903945-904030)
chr4 (40-127)||(22234839-22234926)
chr4 (33-88)||(49431077-49431132)
chr4 (33-127)||(24613643-24613737)
chr4 (25-70)||(18575988-18576033)
chr4 (47-88)||(19097861-19097902)
chr4 (43-88)||(34306767-34306812)
chr4 (33-85)||(3947714-3947766)
chr4 (43-127)||(19312358-19312442)
chr4 (33-77)||(28000683-28000727)
chr4 (68-124)||(51701284-51701340)
chr4 (33-88)||(2361928-2361983)
chr4 (33-88)||(12895227-12895282)
chr4 (25-88)||(15724488-15724551)
chr4 (25-76)||(47264060-47264111)
chr4 (41-111)||(11326592-11326661)
chr4 (33-127)||(30522858-30522951)
chr4 (24-122)||(30838238-30838336)
chr4 (33-74)||(482196-482237)
chr4 (33-78)||(715558-715603)
chr4 (33-78)||(752884-752929)
chr4 (43-88)||(8423681-8423726)
chr4 (25-98)||(16184872-16184945)
chr4 (33-74)||(28084589-28084630)
chr4 (33-78)||(29205529-29205574)
chr4 (25-77)||(7214471-7214523)
chr4 (40-88)||(12797298-12797346)
chr4 (33-85)||(28964201-28964253)
chr4 (33-69)||(30094083-30094119)
chr4 (47-127)||(46083947-46084027)
[»] scaffold0136 (1 HSPs)
scaffold0136 (33-127)||(3791-3885)
[»] scaffold0086 (1 HSPs)
scaffold0086 (33-127)||(2951-3045)
[»] scaffold0019 (1 HSPs)
scaffold0019 (33-127)||(71748-71842)
[»] chr2 (27 HSPs)
chr2 (25-127)||(34784916-34785018)
chr2 (33-127)||(37419766-37419860)
chr2 (33-88)||(2438672-2438727)
chr2 (33-124)||(11223806-11223896)
chr2 (33-88)||(19942316-19942371)
chr2 (25-85)||(22084761-22084824)
chr2 (33-122)||(35056896-35056985)
chr2 (25-88)||(12224274-12224337)
chr2 (25-88)||(20242672-20242735)
chr2 (33-88)||(24009346-24009401)
chr2 (33-88)||(26769573-26769628)
chr2 (33-127)||(30717472-30717566)
chr2 (40-86)||(38117119-38117165)
chr2 (33-73)||(14996172-14996212)
chr2 (40-88)||(15972924-15972972)
chr2 (47-127)||(36096331-36096411)
chr2 (33-88)||(18840966-18841021)
chr2 (33-88)||(27084320-27084375)
chr2 (33-88)||(28596520-28596575)
chr2 (25-124)||(36756278-36756377)
chr2 (25-84)||(37411189-37411248)
chr2 (33-123)||(44860347-44860437)
chr2 (44-85)||(34993946-34993987)
chr2 (28-72)||(2331870-2331914)
chr2 (33-69)||(10535698-10535734)
chr2 (64-116)||(18054776-18054828)
chr2 (25-85)||(41843500-41843560)
[»] scaffold0050 (1 HSPs)
scaffold0050 (33-88)||(70329-70384)
[»] scaffold0003 (2 HSPs)
scaffold0003 (40-127)||(241617-241704)
scaffold0003 (25-70)||(236919-236964)
[»] scaffold0652 (1 HSPs)
scaffold0652 (33-88)||(415-470)
[»] scaffold0083 (1 HSPs)
scaffold0083 (25-88)||(45475-45538)
[»] scaffold0036 (1 HSPs)
scaffold0036 (33-127)||(9689-9783)
[»] scaffold0361 (1 HSPs)
scaffold0361 (25-86)||(14580-14641)
[»] scaffold0053 (1 HSPs)
scaffold0053 (43-88)||(8849-8894)
[»] scaffold0044 (1 HSPs)
scaffold0044 (50-127)||(53203-53280)
[»] scaffold0004 (1 HSPs)
scaffold0004 (33-86)||(92875-92928)
[»] scaffold0008 (1 HSPs)
scaffold0008 (33-125)||(263314-263406)
[»] scaffold0512 (1 HSPs)
scaffold0512 (25-88)||(4981-5044)
[»] scaffold0171 (1 HSPs)
scaffold0171 (25-127)||(23534-23636)
[»] scaffold0793 (1 HSPs)
scaffold0793 (33-78)||(4834-4879)
[»] scaffold0022 (1 HSPs)
scaffold0022 (25-78)||(90904-90957)
[»] scaffold0380 (1 HSPs)
scaffold0380 (33-85)||(8655-8707)
[»] scaffold0039 (1 HSPs)
scaffold0039 (40-84)||(84922-84966)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 123 - 353
Target Start/End: Complemental strand, 26312524 - 26312302
Alignment:
Q  123 gtgatccacgactaacccatctgattcaatatgctgaatctcctattctattagagcctccatcctagctctttctctgtctctcacatctcgtctttac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26312524 gtgatccacgactaacccatctgattcaatatgctgaatctccgattctattagagcctccatcctagctctttctctgtctctcacatctcgtctttac 26312425  T
Q  223 cctctttaacaggaccatacatcactggaaaagctatgtgactccacttgaagctaaatacgaaaacaaaataggtaccgaccccaacaatcaatatgtt 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||        ||||||||||||    
T  26312424 cctctttaacaggaccatacatcactggaaaagctatgtgactccatttgaagctaaatactaaaacaaaataggtaccg--------aatcaatatgtt 26312333  T
Q  323 acactagccctatttaagggattggtatggg 353  Q
    |||||||||||||||||||||||||||||||    
T  26312332 acactagccctatttaagggattggtatggg 26312302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 346 - 512
Target Start/End: Complemental strand, 26311810 - 26311644
Alignment:
Q  346 ggtatgggggatataactcgacaactagccactgtccagtaaatggtcccccatttttagaccaccatgggtggcaacgcctccatagttgggtcaaggg 445  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  26311810 ggtatgggggatataactcgacaagtagccactgtccagtaaatggtcccccatttttagaccaccacgggtggcaacgcctccatagttgggtgaaggg 26311711  T
Q  446 ggaactggcctttggctaagaaccggttgccacgagttgactaggtcgcattaagatacgacaaatt 512  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  26311710 ggaactgtcctttggctaagaactggttgccacaagttgactaggtcgcattaagatacgacaaatt 26311644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 555 - 667
Target Start/End: Complemental strand, 26311546 - 26311434
Alignment:
Q  555 accgataccctgaatctataaaaagcattaatatgtattattgatggttacaaacaaaggccagactcatacatacatcatgatccagataaagaaatat 654  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  26311546 accgatacccagaatctataaaaagcattaatatgtattattgatggttacaaacaaaggccagactcatacatacatcatgacccagataaataaatat 26311447  T
Q  655 accaagaaacata 667  Q
    |||||| ||||||    
T  26311446 accaaggaacata 26311434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 26288328 - 26288247
Alignment:
Q  126 atccacgactaacccatctgattcaatatgctgaatctcctattctattagagcctccatcctagctctttctctgtctctc 207  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  26288328 atccacgactaacccatctgattcaatatgctgcatctccgattctattaaagcctccatcctagctctttctctgtctctc 26288247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 26312890 - 26312819
Alignment:
Q  18 acatcataagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgat 89  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||| ||||||||||    
T  26312890 acatcataagcacatacactcctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgat 26312819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 21542138 - 21542056
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    ||||| |||||||||||||||| |||||||||||||| |||||||||  ||||||  | || |||||||||||||||||||||    
T  21542138 ggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 39698658 - 39698564
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||||||||| ||||||| || || |||||||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  39698658 acactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgat 39698564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 26319997 - 26319932
Alignment:
Q  221 accctctttaacaggaccatacatcactggaaaagctatgtgactccacttgaagctaaatacgaa 286  Q
    ||||| |||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||||||    
T  26319997 accctttttaacaggaccatacatcactggaagaactatgggactccacttaaagctaaatacgaa 26319932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 21522867 - 21522776
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    |||||| | |||||||||||||||||||| | |||||||||||||| |||||||||  ||||||  | |  |||||||||||||||||||||    
T  21522867 acactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgt 21522776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 21533433 - 21533342
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    |||||| | |||||||||||||||||||| | |||||||||||||| |||||||||  ||||||  | |  |||||||||||||||||||||    
T  21533433 acactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgt 21533342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 18592190 - 18592099
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    |||||||||| ||||| ||||||||| |||||||||||||| |||| |||||||||  ||||||    |||| |||||||| ||||||||||    
T  18592190 acactcatcgaattagccgtgtcccgatgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatgt 18592099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 19579819 - 19579724
Alignment:
Q  32 tacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||||| ||||||||||||||||||||||| |||||  |||||||| |||||| ||  ||||||  | || ||||||| |||| |||||||||||    
T  19579819 tacactcctcggattaggcgtgtcccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaattatgtgat 19579724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 21576698 - 21576749
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgaca 84  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  21576698 acactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgaca 21576749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 580 - 627
Target Start/End: Complemental strand, 26340967 - 26340920
Alignment:
Q  580 cattaatatgtattattgatggttacaaacaaaggccagactcataca 627  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26340967 cattaatatgtactattgatggttacaaacaaaggccagattcataca 26340920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 21814369 - 21814284
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||| ||||||||||| ||| |||||||||||||||| |||||||||  ||||||  | |||| ||||||||||| ||| ||||||    
T  21814369 ggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgtgat 21814284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 27932349 - 27932288
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 86  Q
    ||||||| |||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  27932349 aagcacaaacactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtccgacacc 27932288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 7677815 - 7677728
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||||||||||||| |||| ||| |||||  ||||||||  ||||||  | || | ||||| ||||||||||||||||    
T  7677815 tcggattaggcgtgtcccggtgtcggacatgtgacgtgtcagacaccgacacgacaccgacacttctaattgcactgaattatgtgat 7677728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 15382591 - 15382536
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||| | |||||||    
T  15382591 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccaacaccga 15382536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 21191009 - 21191064
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||||||| ||| ||||||||| |||| |||||||||    
T  21191009 acactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccga 21191064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 32766885 - 32766972
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaatt 120  Q
    |||||| || |||||| ||| ||| |||||| |||||||||||| |||||||||||  |||||| || |||| |||||||| ||||||    
T  32766885 acactcctcagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgacacgacacaaacacatataattacattgaatt 32766972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 6401615 - 6401521
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | |||| |||||| |||| |||||||||||||||||||| |||||| ||  ||||||  | |||| ||||||||||| ||| ||||||    
T  6401615 acactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtattttgtgat 6401521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 31084434 - 31084382
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| ||||||||||| |||||| ||||| |||||||||||||| ||||||    
T  31084434 acactcctcggattaggcatgtcccagtgtcggacacgtgtcgtgtccgacac 31084382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 43001911 - 43001859
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| ||||||||||||||||| |||||  |||||||||||||| ||||||    
T  43001911 acactcctcggattaggcgtgtccaggtgtttgacacgtgtcgtgtccgacac 43001859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 43564980 - 43564932
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||||||||||||||||| ||| ||||| |||||||| |||||||||    
T  43564980 tcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccga 43564932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 17088397 - 17088358
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtg 72  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  17088397 acactcctcggattaggcgtgtcccggtgtcggacacgtg 17088358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 30098991 - 30099046
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| | |||| ||||||||||| |||||||||||||||||| | |||||||||    
T  30098991 acactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccga 30099046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 39268551 - 39268606
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||||| ||||| ||||| |||||||| | |||||||    
T  39268551 acactcctcggattaggcgtgtcccagtgtcggacacatgtcgtgtccaacaccga 39268606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 21194076 - 21194121
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| |||||||||||||| ||||||||| |||| |||||||||    
T  21194076 acactcctcggattaggcgtgccccggtgtctgacatgtgtcgtgt 21194121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 30098436 - 30098391
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||||||| |||||| |||||| |||||||||||||| ||||||    
T  30098436 tcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacac 30098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 30183674 - 30183621
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    ||||||| |||||  ||| |||||||||||||| ||||| ||||||||||||||    
T  30183674 aagcacagacacttctcgaattaggcgtgtcccagtgtcggacacgtgtcgtgt 30183621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 14873628 - 14873588
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgt 73  Q
    |||||| |||||||||||||||||||||||  |||||||||    
T  14873628 acactcctcggattaggcgtgtcccggtgttggacacgtgt 14873588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 26341090 - 26341038
Alignment:
Q  454 cctttggctaagaaccggttgccacgagttgactaggtcgcattaagatacga 506  Q
    |||||||||| |||||| ||||||| ||| |||||| | ||||||||||||||    
T  26341090 cctttggctatgaaccgattgccacaagtagactagcttgcattaagatacga 26341038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 4987233 - 4987327
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| | |||||||  || ||| || || ||||||||||||||||||||||||    
T  4987233 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaattatgtgat 4987327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 14832205 - 14832122
Alignment:
Q  44 attaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||  ||||||  | || |||||||||| ||| |||||||||    
T  14832205 attaggcgtgtcccggtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgat 14832122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 20503571 - 20503516
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  20503571 acactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccga 20503516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 40993288 - 40993343
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  40993288 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccga 40993343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 41961599 - 41961686
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||||||| ||||| |||||||||||||| ||| |||||  ||||||  | || ||||||||||| |||| |||||||    
T  41961599 tcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaataatgtgat 41961686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 55401181 - 55401126
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  55401181 acactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 55401126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 34185065 - 34185159
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||| |||||  ||  ||||||  | || ||||||||||||||||| ||||||    
T  34185065 acactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattacactgaattgtgtgat 34185159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 7171615 - 7171554
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 86  Q
    ||||| |||||||| | |||||||||||||| ||||||| |||||||||||||| |||||||    
T  7171615 aagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacacc 7171554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 8039769 - 8039866
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattat 122  Q
    ||||||| | |||| |||||||| ||||||||||||||| |||| || || ||| |||||||||  ||||||  | |||| |||||||||||||||||    
T  8039769 aagcacagatactcttcggattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaattat 8039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 10955056 - 10955003
Alignment:
Q  35 actcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||| |||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccga 10955003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 14209221 - 14209136
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||| || ||||| ||||  ||||||||||||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  14209221 ggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgat 14209136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 14217002 - 14216915
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||| ||||||| |||||  ||||||||||||| ||||||  |  ||||||| | || ||||||||||||||||||| ||||    
T  14217002 tcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaattatatgat 14216915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 14223131 - 14223044
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||| ||||||| |||||  ||||||||||||| ||||||  |  ||||||| | || ||||||||||||||||||| ||||    
T  14223131 tcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaattatatgat 14223044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 25065024 - 25064932
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||| |  ||||||||||||||||||||||||||||| ||||||| |  ||| || || |||  |||||||||| |||||||||||    
T  25065024 acactcctcggataaaccgtgtcccggtgtcagacacgtgtcgtgtccgacaccaacacgataccaacaca--taattacactaaattatgtgat 25064932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 15999963 - 16000008
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||    
T  15999963 acactccttggattaggcgtgtcccggtgtcggacacgtgtcgtgt 16000008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 27505357 - 27505312
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||||    
T  27505357 acactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgt 27505312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 10690197 - 10690257
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||||||| || |||||||||| ||||| | ||||||||||||||| |||| ||||||    
T  10690197 aagcacatacattcctcggattaggtgtgtcgccgtgtcagacacgtgttgtgtccgacac 10690257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 28812638 - 28812538
Alignment:
Q  27 gcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtga 126  Q
    ||||| |||||| ||||||||||||||||| | |||| |||| || ||||||  |||||| |  ||||||  | || ||||| |||||||||||||||||    
T  28812638 gcacagacactcctcggattaggcgtgtcctgctgtcggacatgtatcgtgtctgacaccaacacgacaccgacacttgtaactacactgaattatgtga 28812539  T
Q  127 t 127  Q
    |    
T  28812538 t 28812538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 35223044 - 35222989
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||| | ||||||||| |||||||||||||||| ||| |||||||||    
T  35223044 acactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccgacaccga 35222989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 15796236 - 15796330
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | ||||||||||||| |||||||  ||||||||| |||| ||||||| |  ||||||  | |  ||||||||||||||||||| ||||    
T  15796236 acactctttggattaggcgtgttccggtgttggacacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaattatatgat 15796330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 16192666 - 16192720
Alignment:
Q  24 taagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||||| |||||| ||  ||||||  |||||||||||||||||||||||||||    
T  16192666 taagcacaaacactcctcatattaggtatgtcccggtgtcagacacgtgtcgtgt 16192720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 40052418 - 40052380
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgt 71  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  40052418 acactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 21720883 - 21720842
Alignment:
Q  28 cacatacactcatcggattaggcgtgtcccggtgtcagacac 69  Q
    |||| |||||||||||||||| |||||||||||||| |||||    
T  21720883 cacagacactcatcggattagacgtgtcccggtgtcggacac 21720842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 26492165 - 26492214
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgat 89  Q
    ||||||||| ||||||  ||||||||||| ||||||||| ||||||||||    
T  26492165 tcggattagacgtgtcttggtgtcagacatgtgtcgtgtccgacaccgat 26492214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 28918109 - 28918064
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| | |||||||||||||||| ||||| ||||||||||||||    
T  28918109 acactccttggattaggcgtgtcccagtgtcggacacgtgtcgtgt 28918064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 3631790 - 3631738
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| ||||| ||||||||||| |||||| |||| ||||||||| ||||||    
T  3631790 acactcctcggactaggcgtgtcctggtgtcggacatgtgtcgtgtccgacac 3631738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 17005553 - 17005601
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgt 73  Q
    ||||||| |||||| |||||||||  |||||| ||||||||||||||||    
T  17005553 aagcacaaacactcctcggattagaggtgtcctggtgtcagacacgtgt 17005601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 47989614 - 47989520
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  47989614 acactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgat 47989520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 1486649 - 1486709
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||||||||||| ||||||    
T  1486649 aagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 1486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 27471524 - 27471600
Alignment:
Q  49 gcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtg 125  Q
    ||||||||||||||| |||||||||||| | | ||||||||  ||||| || |||||||||||||||||||||||||    
T  27471524 gcgtgtcccggtgtcggacacgtgtcgtatccaacaccgatatgacaccaacacatgtaattacactgaattatgtg 27471600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 6427581 - 6427487
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| |||| || |  ||||||  | || |||| ||||| |||||||||||||    
T  6427581 acactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacgcctacacgacactgacacttgtagttacattgaattatgtgat 6427487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 9828161 - 9828067
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||  ||||| ||  ||||||  | ||||  |||||||||||||||||||||    
T  9828161 acactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaattatgtgat 9828067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 6332794 - 6332693
Alignment:
Q  26 agcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtg 125  Q
    |||||| ||||||||||||| |||| ||||| ||||| ||||| || |||  ||||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  6332794 agcacagacactcatcggatcaggcatgtcctggtgttagacatgtatcgcattcgacaccaacacgacaccgatacttgtaattacactgaattatgtg 6332695  T
Q  126 at 127  Q
    ||    
T  6332694 at 6332693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 32461415 - 32461499
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||  | |||| || || |||||||||| | |||||||||||    
T  32461415 ggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac-acaccaacacttgtaattacattaaattatgtgat 32461499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 40917859 - 40917779
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaatt 120  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||  ||||||  | || |||||||||||| ||||    
T  40917859 tcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccgagacttgtaattacacttaatt 40917779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 6612113 - 6612204
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    |||||| | ||||||||||||||| |||||| ||||| | |||||| ||||| |||  ||||||  | || |||||||||||||||||||||    
T  6612113 acactccttggattaggcgtgtcctggtgtcggacacatatcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgt 6612204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 18556405 - 18556492
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||||||| ||||| || |||||||| ||  |||||||   |||||| ||||| |||||||||| | |||||||||||    
T  18556405 tcggattaggcgtgtcccagtgtcggatacgtgtcgggtctgacaccgtcacgacaccaatacttgtaattacattaaattatgtgat 18556492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 31015134 - 31015091
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
T  31015134 ggattaggcgtgtcccgatgtcagacacgtgtcgtgtccgacac 31015091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 37598937 - 37598882
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||||||||||||||||||  |||| |||||||||||||| |||||||||    
T  37598937 acactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccga 37598882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 40181976 - 40181921
Alignment:
Q  34 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgat 89  Q
    ||||| |||||||||||||||||||||||  ||||||||| |||| ||||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgat 40181921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 5944400 - 5944306
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||||||||| |||||||||| |||| |||| |||| || || |||  ||||||  | || | ||||||||||||||||||||||    
T  5944400 acactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaattatgtgat 5944306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 25934733 - 25934639
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | |||| |||||| |||| |||||||||||||||||||| |||||||||  ||| ||  | |||| ||||||||||| ||| ||||||    
T  25934733 acactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattacactgtattttgtgat 25934639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 9690218 - 9690267
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtc 74  Q
    ||||||| ||||||  ||||||||||||||||||||||| ||||||||||    
T  9690218 aagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtc 9690267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 16164252 - 16164297
Alignment:
Q  28 cacatacactcatcggattaggcgtgtcccggtgtcagacacgtgt 73  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||||    
T  16164252 cacatacactcttcggattaggcgtgtcctggtgtcggacacgtgt 16164297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 18190053 - 18190106
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||| ||||||||| |||||||||| ||||||||||||| ||||||||| ||||    
T  18190053 aagcgcatacactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgt 18190106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 29163344 - 29163389
Alignment:
Q  43 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||    
T  29163344 gattagccgtgtcccggtgtcaggcacgtgtcgtgtccgacaccga 29163389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 25361999 - 25361909
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||||||  ||| |||||||| ||||  |||||||| |||||||||  ||||||  | |||| ||||||||||||||||||||||    
T  25361999 acactcttcggattagg--tgttccggtgtcggaca--tgtcgtgtccgacaccgacacgacactgacacatataattacactgaattatgtgat 25361909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 46348343 - 46348391
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||||||||| ||||||| |||||||||||||| |||||||||    
T  46348343 tcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 46348391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 5898219 - 5898274
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||||||||| |||||||||||||  ||||||||||||||  ||||||||    
T  5898219 acactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccga 5898274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 6427635 - 6427596
Alignment:
Q  39 atcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  6427635 atcggattaggcgtgtcccggtatcggacacgtgtcgtgt 6427596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 22515840 - 22515895
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||| ||||||| || | ||||||||| |||||||||    
T  22515840 acactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccga 22515895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 40258886 - 40258941
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||||||||||||||||| |||||| |||| |||||||||  ||||||||    
T  40258886 acactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccga 40258941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 42359402 - 42359457
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||||||||||| |||||  ||| ||| |||||||||    
T  42359402 acactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacaccga 42359457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 1815362 - 1815308
Alignment:
Q  34 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||| || ||||||||||||||||||||| |||| |||||||||  ||||||||    
T  1815362 cactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccga 1815308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 31694652 - 31694746
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| || |||||||||||| ||||||||  | | |||| |||| |||||||||  ||||||  | || |||||||| |||||||||||||||    
T  31694652 acactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaattatgtgat 31694746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 51410122 - 51410076
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||||||||||| ||||||| || ||||||||||| |||||||||    
T  51410122 ggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccga 51410076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 16297234 - 16297287
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 86  Q
    |||||| ||||||||||||||||| |||||| |||||  ||||||| |||||||    
T  16297234 acactcctcggattaggcgtgtcctggtgtcggacacacgtcgtgtccgacacc 16297287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 27965953 - 27965990
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacg 70  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  27965953 acactcctcggattaggcgtgtcccggtgtcaggcacg 27965990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 28268134 - 28268175
Alignment:
Q  29 acatacactcatcggattaggcgtgtcccggtgtcagacacg 70  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  28268134 acatacactcctcggattaggcgtatcccggtgtcaaacacg 28268175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 44482310 - 44482253
Alignment:
Q  70 gtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||||||| |||||||||  ||||||  | |||| ||||||||||||||||||||||    
T  44482310 gtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgat 44482253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 15765864 - 15765828
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacac 69  Q
    |||||| |||||||||||||||||| |||||||||||    
T  15765864 acactcttcggattaggcgtgtcccagtgtcagacac 15765828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 34315798 - 34315738
Alignment:
Q  64 agacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    ||||| |||||||||||||||||||| ||| ||  | |||| ||||||||| |||||||||    
T  34315798 agacatgtgtcgtgttcgacaccgatacgataccgacacatataattacaccgaattatgt 34315738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 41597415 - 41597475
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||| |||||| | |||| | |||| |||| |||||||||||||||||||| ||||||    
T  41597415 aagcacagacactccttggataaagcgtatccccgtgtcagacacgtgtcgtgtccgacac 41597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 24339758 - 24339665
Alignment:
Q  34 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||| |||||||||||||||||||||||| || ||||||||||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  24339758 cactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgat 24339665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 11831540 - 11831455
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||||||||||  ||||||||| |||| |||||||| |||||||||| |||||||||||| |||||||||||| |||||| ||||    
T  11831540 ggattaggcgtgctccggtgtcaaacacatgtcgtgtccgacaccgatacgacacgaatacttgtaattacactaaattatatgat 11831455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 25822762 - 25822685
Alignment:
Q  43 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaatt 120  Q
    |||||||| ||||||| ||||||||||||||||||| ||| |||||| ||||||  | || |||||||||||||||||    
T  25822762 gattaggcatgtcccgatgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattacactgaatt 25822685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 43027417 - 43027462
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  43027417 acactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 43027462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 5409784 - 5409836
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||    
T  5409784 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 21560610 - 21560526
Alignment:
Q  43 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||||||||||  |||||| ||||| || ||||||| ||||||||| ||||||  | || ||||||||||||||||||||||||    
T  21560610 gattaggcgtgtttcggtgttagacatgtatcgtgtttgacaccgatacgacaccgacacttgtaattacactgaattatgtgat 21560526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 3294252 - 3294309
Alignment:
Q  28 cacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||| ||| ||||    
T  3294252 cacatacactcttcggattaggcgtgtcccggtgttggacacgtgtcgtcttcaacac 3294309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 598307 - 598259
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  598307 tcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccga 598259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 21864922 - 21864863
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgaca 84  Q
    ||||||| |||||| ||| ||||| |||||||||||||| |||||||||||||| |||||    
T  21864922 aagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtccgaca 21864863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 26033403 - 26033497
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||| ||||| |||| || |||||||||| |||  ||||||||  ||| ||  | || ||||||||||||||||||||||||    
T  26033403 acactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacacgagaccgacacttgtaattacactgaattatgtgat 26033497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 32308237 - 32308143
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||  ||||| ||||||| |||| ||||||||| | |||||||  ||||||  | ||||  |||||||||||||||||||||    
T  32308237 acactcctcggattagctgtgtctcggtgtcggacatgtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtgat 32308143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 32093967 - 32094020
Alignment:
Q  33 acactcatcggattaggcgtgtccc-ggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| |||||||||||||||||| |||||| |||||||||||||| ||||||    
T  32093967 acactcctcggattaggcgtgtccccggtgtcggacacgtgtcgtgtccgacac 32094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 9778611 - 9778559
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| | |||||||||||||||||||||| ||||||||| |||| ||||||    
T  9778611 acactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 13770802 - 13770750
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| ||||||||||||||| |||||||| ||||||||| |||| ||||||    
T  13770802 acactcttcggattaggcgtgttccggtgtcggacacgtgttgtgtccgacac 13770750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 21880251 - 21880203
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||||||||||||| |||||| |||| ||||||||| |||||||||    
T  21880251 tcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccga 21880203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 15680915 - 15680860
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||| ||||| |||||| ||||||| |||||||||||||| |||||||||    
T  15680915 acactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 15680860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 18212978 - 18213041
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||| |||||| |||||| ||||||||||| |||||||| | | ||||||| |||||||||    
T  18212978 aagcacagacactcctcggataaggcgtgtccccgtgtcagaaaggggtcgtgtccgacaccga 18213041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 32287416 - 32287471
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||| ||||||||||||| ||||| |||| ||| |||||||||    
T  32287416 acactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccga 32287471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 38134340 - 38134378
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtc 63  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  38134340 aagcacatacactcctcggattaggcgtgtcccgatgtc 38134378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 8234243 - 8234198
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccg 87  Q
    |||||||||||||| ||||||| |||| ||||||||| ||||||||    
T  8234243 ggattaggcgtgtctcggtgtcggacatgtgtcgtgtccgacaccg 8234198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 29763142 - 29763187
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| ||||||||||||||||| | |||| ||||||||||||||    
T  29763142 acactcctcggattaggcgtgtcctgatgtcggacacgtgtcgtgt 29763187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 24105792 - 24105748
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacac 69  Q
    ||||||| |||||| |||| ||||||||||||||||||| |||||    
T  24105792 aagcacaaacactcctcgggttaggcgtgtcccggtgtcggacac 24105748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 38804494 - 38804538
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacac 69  Q
    |||||||||||||| ||||||||||| |||||||| ||| |||||    
T  38804494 aagcacatacactcctcggattaggcatgtcccggcgtcggacac 38804538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 16766807 - 16766720
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  16766807 tcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgat 16766720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 8365463 - 8365555
Alignment:
Q  35 actcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||| |||||||||||||||||| ||||| |||||||||||||| ||| |||||  ||||||  | || ||||||||||| ||||||||||||    
T  8365463 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaattatgtgat 8365555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 34595240 - 34595185
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  34595240 acactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccga 34595185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 3209513 - 3209453
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||| |||||| ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  3209513 aagcacaaacactcctcggattaggcgtgtccgggtgtcggacgcgtgtcgtgttcgacac 3209453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 17327603 - 17327655
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| ||||||    
T  17327603 acactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacac 17327655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 28152204 - 28152149
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||    
T  28152204 acactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccga 28152149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 8714097 - 8714003
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||| ||||||||||| |||| || | ||||||||| |||||||||  ||||||  | |  ||||||||||||||||||||||||    
T  8714097 acactcctcggattgggcgtgtcccgatgtcggaaatgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgat 8714003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 5970051 - 5970144
Alignment:
Q  34 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||| ||||||| ||||||||||| |||| || | ||||||||| |||||||||  ||||||  | |  ||||||||||||||||||||||||    
T  5970051 cactcctcggattgggcgtgtcccgatgtcggaaatgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgat 5970144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 9107313 - 9107406
Alignment:
Q  34 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||| |||||||||| ||||||||||||| |||||  || |||| |||||||||  ||||||  | || ||||||||||||||||| ||||||    
T  9107313 cactcctcggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattttgtgat 9107406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 9522999 - 9522914
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||| ||||||| |||||||||||  | |||||||||  | ||||  | || ||||||||||||||||||||||||    
T  9522999 ggattaggcgtgtctcggtgtcggacacgtgtcggatccgacaccgacacaacaccgacacttgtaattacactgaattatgtgat 9522914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 16488541 - 16488626
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||| ||||||||||| ||| |||||||||||||||| |||||||||  ||||||  | |||| ||||||||||| ||| ||||||    
T  16488541 ggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgtgat 16488626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 12696443 - 12696383
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||| |||||| | |||| ||| |||||||||||||||||||||||||||| ||||||    
T  12696443 aagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 10339067 - 10339162
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaatt-acactgaattatgtgat 127  Q
    |||||| || ||||||||||||||| ||||| |||| ||||||||| |||||||||  || |||  | |||| ||||| |||||||||||||||||    
T  10339067 acactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacacggcactgacacatataattaacactgaattatgtgat 10339162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 28715409 - 28715346
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||||||  ||| ||||||||||||||||||||  ||||||||||||| |||||||||    
T  28715409 aagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccga 28715346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 33001234 - 33001297
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||| |||||| | ||||||||||| |  |||||||||||||||||||||| |||||||||    
T  33001234 aagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccgacaccga 33001297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 7248475 - 7248381
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||| | |||||||||||||| ||||| ||| |||| | |||||||  |||| | || |||| ||||||| ||||||||||||||    
T  7248475 acactcctcggatttgacgtgtcccggtgtcggacacatgttgtgtccaacaccgacacgactccaacacatataattaccctgaattatgtgat 7248381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 18367953 - 18367859
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | |||| ||||||||||| |||||||||| |||||||||  ||||||||  ||||||  | |||| ||||||||||| ||| ||||||    
T  18367953 acactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcattttgtgat 18367859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 31385036 - 31384943
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | |||||||||||||||||||||  |||||||||||||| | ||| | |  ||||||  | || ||||||||||||||||||||||||    
T  31385036 acactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgtccaaca-ctacacgacactgacacttgtaattacactgaattatgtgat 31384943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 23130406 - 23130459
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||||||||||| || |||||||| ||||||| | |||||||||||||||||    
T  23130406 aagcacatacactcctcagattaggcatgtcccgatatcagacacgtgtcgtgt 23130459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 24645595 - 24645532
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||| |||||| ||||||||| ||||||  |||||| ||||||||||||||  ||||||||    
T  24645595 aagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccga 24645532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 32978852 - 32978907
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| | ||||||| |||||||||||||| |||| ||||||||| |||||||||    
T  32978852 acactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccga 32978907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 9658974 - 9658940
Alignment:
Q  44 attaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    ||||||||||| |||||||||||||||||||||||    
T  9658974 attaggcgtgttccggtgtcagacacgtgtcgtgt 9658940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 17841542 - 17841596
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccg 87  Q
    |||||| |||||||||||||||| | ||||| ||||| |||||||| ||||||||    
T  17841542 acactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccg 17841596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 8776921 - 8776966
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| |||||||||| ||||| ||||||| ||||||||||||||    
T  8776921 acactcctcggattaggtgtgtctcggtgtcggacacgtgtcgtgt 8776966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 17435306 - 17435225
Alignment:
Q  43 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    |||||| |||||||| |||||  ||||||||||||| ||||| |||    |||| || || |||||||||||||||||||||    
T  17435306 gattagacgtgtcccagtgtcgaacacgtgtcgtgtccgacatcgacaaaacactaacacttgtaattacactgaattatgt 17435225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 26178623 - 26178667
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacac 69  Q
    ||||||| |||||| || |||||||||||||||||||||| ||||    
T  26178623 aagcacagacactcctccgattaggcgtgtcccggtgtcaaacac 26178667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 5938 - 6032
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | |||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||  | |||| ||||||||||| ||| ||||||    
T  5938 acactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattacactgcattttgtgat 6032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 8343441 - 8343339
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||  |||||   | ||||||  | || |||||||||||| ||||||||    
T  8343441 aagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacacgtgtacgacactgacacttgtaattacactaaattatgt 8343342  T
Q  125 gat 127  Q
    |||    
T  8343341 gat 8343339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 22652093 - 22651999
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||||| |||||||||||||| ||||| |||||||| |||||||||  ||||||  | || |||||||| | |||||||||||||    
T  22652093 acactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgtgat 22651999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 26902117 - 26902211
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| || ||| ||||||||||| ||| |||||||||||||||| ||||||  || ||||||  | |||| ||||||||||||||||||||||    
T  26902117 acactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaattatgtgat 26902211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 29447561 - 29447466
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgatc 128  Q
    |||||| || |||||| | |||||||||||| ||||| ||||||||  ||||||||  |||||| || |||| |||||||||| ||||||||||||    
T  29447561 acactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattacacttaattatgtgatc 29447466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 29447052 - 29447146
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | ||||||||||||||| |||||||||||| |||||||| |||||||||   |||||  | || |||| ||||| |||||||||||||    
T  29447052 acactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaattatgtgat 29447146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 29510246 - 29510340
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||| ||||||||||||| |||||| ||||||| |||||||||  | ||||  | || |||||||| |||||||| ||||||    
T  29510246 acactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaattttgtgat 29510340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 22943302 - 22943347
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||    
T  22943302 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 22943347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 34450974 - 34451039
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacga 98  Q
    |||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||  ||||||||    
T  34450974 acactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacacgacacga 34451039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 36450699 - 36450760
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 86  Q
    ||||||| |||||| ||||||||||||||||| |||||| |||||| ||||||| |||||||    
T  36450699 aagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacc 36450760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 5813687 - 5813643
Alignment:
Q  44 attaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||||||||||||||||| |||||||||||||| |||||||||    
T  5813687 attaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccga 5813643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 16641914 - 16641974
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||| |||||| |||||||||| |||||||||||| |||||| |||||||| ||||||    
T  16641914 aagcacagacactcctcggattaggtgtgtcccggtgttagacacatgtcgtgtccgacac 16641974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 15816078 - 15816165
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||| |  ||||||  | || | |||||||||| |||||||||||    
T  15816078 tcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaattatgtgat 15816165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 24205761 - 24205816
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||||||||||||||| ||||||||||||| | || ||||||||||||||    
T  24205761 acactcctcggattaggcgtgttccggtgtcagacatgcgttgtgttcgacaccga 24205816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 33405337 - 33405392
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||||||| |||||||||    
T  33405337 acactcattggattagccgtgtccaggtgtcagacatgtgtcgtgtccgacaccga 33405392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 11927028 - 11927122
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||||||||||||||||||||| || |||  || || ||||||||  |||||| |  ||||||  | |||| ||||||||||||||||||||||    
T  11927028 acactcatcggattaggcgtgtctcgatgttggatacatgtcgtgtatgacaccaacacgacaccgacacatataattacactgaattatgtgat 11927122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 11944782 - 11944688
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||||||||||||||||||||| ||||||| || || ||||||||  |||| | |  ||||||  | |||| |||||||||||| |||||||||    
T  11944782 acactcatcggattaggcgtgtctcggtgtcggatacatgtcgtgtatgacatcaacacgacaccgacacatataattacactgagttatgtgat 11944688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 2572016 - 2572092
Alignment:
Q  51 gtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||| || |||||||||||||| |||||| ||  ||||||  | || |||||||||||| |||||||||||    
T  2572016 gtgtcccggtatcggacacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgat 2572092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 3025657 - 3025605
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| ||||||||| |||||| | |||||||||||||||||||| ||||||    
T  3025657 acactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacac 3025605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 8343081 - 8343037
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacac 69  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||    
T  8343081 aagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 14134805 - 14134750
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||| ||||||||||||| |||| | ||||||||||||||| ||||||||    
T  14134805 acactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccga 14134750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 40332297 - 40332242
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||| ||||||||||  |||||||||||||| | |||||||    
T  40332297 acactcctcggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccga 40332242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 3951498 - 3951544
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||||||||| || ||||||||||||||||||||  ||||||||    
T  3951498 ggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccga 3951544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 11803376 - 11803282
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||||| ||||| || ||||| |||| ||||||| | | ||||| |  | |||| || |||| ||||||||||||||||||||||    
T  11803376 acactcctcggattagacgtgtacctgtgtcggacatgtgtcgtatccaacaccaacacaacaccaacacatataattacactgaattatgtgat 11803282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 126300 - 126352
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| ||||||||| ||||||||||| |  |||||||||||||| ||||||    
T  126300 acactcctcggattagccgtgtcccggtattggacacgtgtcgtgtccgacac 126352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 12570687 - 12570766
Alignment:
Q  43 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatg 123  Q
    |||||||||||||| |||||| ||||||||| ||||  ||||||||| | |||| || | || |||||||||| |||||||    
T  12570687 gattaggcgtgtcctggtgtcggacacgtgtagtgtctgacaccgatac-acaccaacatatataattacacttaattatg 12570766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 24858130 - 24858070
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||| |||||| || ||||||||||||||||| ||  ||||| |||||||| ||||||    
T  24858130 aagcacaaacactcctctgattaggcgtgtcccggcgtgggacacatgtcgtgtccgacac 24858070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 23292939 - 23292994
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  23292939 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccga 23292994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 19482785 - 19482691
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||| ||||||| ||||| |||||||||||||| | | |||||  |||||| || || ||||||||||| ||||||||||||    
T  19482785 acactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccgaattatgtgat 19482691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 30982820 - 30982914
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||  ||||||||  ||||||  | || | ||||||||||||| ||||||||    
T  30982820 acactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgat 30982914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 5414114 - 5414208
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | |||| ||| ||||||| |||||||||||||||||||| |||||| ||  ||||||  |||||| ||||||||||| ||| ||||||    
T  5414114 acactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcattttgtgat 5414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 36635436 - 36635347
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||  |||||       ||||||| |||| ||||||||||||||||||||||    
T  36635436 acactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacac-----tcacacgaacacatataattacactgaattatgtgat 36635347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 904030 - 903945
Alignment:
Q  42 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||  ||||||| ||||| ||||| |||||||| | |||||||| ||| ||  |||||| ||||||||||||||||||||||    
T  904030 ggattagatgtgtcccagtgtcggacacatgtcgtgtccaacaccgatacgatactgatacatataattacactgaattatgtgat 903945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 22234839 - 22234926
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||  |||||| |||||| ||||||||||||||  ||||||||  ||||||  | ||||  |||||||||||||||||||||    
T  22234839 tcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactgaattatgtgat 22234926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 49431132 - 49431077
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||| ||||||||||||||||  |||||||||||||| |||||||||    
T  49431132 acactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccga 49431077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 24613643 - 24613737
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | ||||||| ||||||| |||||||||||||||||||||  ||||||||   |||||  | || |||| ||||| |||||||||||||    
T  24613643 acactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaattatgtgat 24613737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 18575988 - 18576033
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacg 70  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||    
T  18575988 aagcacatacactcatcgaattaggcgtgtcccggtttcggacacg 18576033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 19097861 - 19097902
Alignment:
Q  47 aggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  19097861 aggcgtgtccccgtgtcagacacgtgtcatgttcgacaccga 19097902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 34306767 - 34306812
Alignment:
Q  43 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||    
T  34306767 gattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 34306812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 3947714 - 3947766
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| |||||||||| |||||| |||||| |||||||||||||| ||||||    
T  3947714 acactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacac 3947766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 19312442 - 19312358
Alignment:
Q  43 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||| ||||||| |||||||||||| | ||||| |||  ||||||  |||| | |||||||||||||| |||||||    
T  19312442 gattagacgtgtctcggtgtcggacacgtgtcgtatccgacaacgacacgacaccgatacttataattacactgaatcatgtgat 19312358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 28000683 - 28000727
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtg 77  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||    
T  28000683 acactcatcagattaggtgtgtctcggtgtcagacacgtgtcgtg 28000727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 51701340 - 51701284
Alignment:
Q  68 acgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    |||||||||||||||||||||  |||||| || || |||||||||||| ||||||||    
T  51701340 acgtgtcgtgttcgacaccgacacgacactaacacttgtaattacactcaattatgt 51701284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 2361928 - 2361983
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| || ||||||| ||||| |||||||||||||| ||||||| |||||||||    
T  2361928 acactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccga 2361983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 12895227 - 12895282
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| ||||||||||||||||||| |||| || || |||||||| |||||||||    
T  12895227 acactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccga 12895282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 15724488 - 15724551
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||||| |||| |||||||||||||||   |||||| ||||||||| |||| |||||||||    
T  15724488 aagcacataaactcctcggattaggcgtgttttggtgtctgacacgtgttgtgtccgacaccga 15724551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 47264111 - 47264060
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgt 76  Q
    ||||||| || ||| ||||||||||||||||| ||||||||||| |||||||    
T  47264111 aagcacagacgctcttcggattaggcgtgtcctggtgtcagacatgtgtcgt 47264060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 11326592 - 11326661
Alignment:
Q  41 cggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaatta 111  Q
    |||||||||||||||||| |||| |||||||||  ||||||||| | || ||||||  |||||||||||||    
T  11326592 cggattaggcgtgtcccg-tgtcggacacgtgttatgttcgacatcaatacgacaccgatacatgtaatta 11326661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 30522858 - 30522951
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | ||||||| |||||| |||||||||| | |||||||||| ||| ||||| |||| | || | || || |||||||||||||||||||    
T  30522858 acactctttggattagacgtgtctcggtgtcagatatgtgtcgtgtttgacgccgatccgaccc-aacatatatagttacactgaattatgtgat 30522951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 30838336 - 30838238
Alignment:
Q  24 taagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattat 122  Q
    |||||||  |||||| |||| |||||||||||  |||||| ||||||||||| || |||||| ||  ||||||  |||| | |||||||||| ||||||    
T  30838336 taagcacggacactcctcgggttaggcgtgtcttggtgtcggacacgtgtcgcgtccgacactgacacgacaccgatacttataattacactaaattat 30838238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 482196 - 482237
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtc 74  Q
    |||||||||||||||| ||||| | |||||||||||||||||    
T  482196 acactcatcggattagacgtgttcaggtgtcagacacgtgtc 482237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 715558 - 715603
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| |||||||||||||||||| ||||| |||| |||||||||    
T  715558 acactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt 715603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 752884 - 752929
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| |||||||||||||||||| ||||| |||| |||||||||    
T  752884 acactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt 752929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 8423681 - 8423726
Alignment:
Q  43 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||||||||||||||||| ||||  |||||||| |||||||||    
T  8423681 gattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccga 8423726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 16184945 - 16184872
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacga 98  Q
    ||||||| |||||| |||||||||||||||||| ||||| |||| |  |||| | |||||||||  ||||||||    
T  16184945 aagcacaaacactcctcggattaggcgtgtcccagtgtcggacaggcatcgtatgcgacaccgacacgacacga 16184872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 28084630 - 28084589
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtc 74  Q
    |||||| |||||||||||||||||| ||||| ||||||||||    
T  28084630 acactcctcggattaggcgtgtcccagtgtcggacacgtgtc 28084589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 29205574 - 29205529
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| |||||||||||||||||| ||||| |||| |||||||||    
T  29205574 acactcctcggattaggcgtgtcccagtgtcggacatgtgtcgtgt 29205529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 7214471 - 7214523
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtg 77  Q
    ||||||| ||| |||||||||||||| | |||||||||| |||| ||||||||    
T  7214471 aagcacaaacaatcatcggattaggcatttcccggtgtcggacatgtgtcgtg 7214523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 12797298 - 12797346
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||||| | ||||||||||||||||| || |||||| |||||||||    
T  12797298 tcggattagacttgtcccggtgtcagacatgtatcgtgtccgacaccga 12797346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 28964201 - 28964253
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| |||||||||||||||||| ||||| || | ||||||||| ||||||    
T  28964201 acactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacac 28964253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 30094119 - 30094083
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacac 69  Q
    |||||| |||||||||||||||||||||||| |||||    
T  30094119 acactcttcggattaggcgtgtcccggtgtccgacac 30094083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 46083947 - 46084027
Alignment:
Q  47 aggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||||||||| | |||||||||||||||||| ||| || ||  ||||||  | |||| ||||||||||  ||||||||||    
T  46083947 aggcgtgtccccgcgtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataattacactagattatgtgat 46084027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 3791 - 3885
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||||||||| || |||| |||| ||||||||| ||||||| |  ||||||  | || ||||||||||||||||||||||||    
T  3791 acactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaattatgtgat 3885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 3045 - 2951
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||||||||||| ||||||||  |||||||||||||  || |||||  ||||||  |||| |||||||||||| |||||||||||    
T  3045 acactcctcggattaggcgtgttccggtgtcgaacacgtgtcgtgtctgataccgacacgacactgatacttgtaattacactaaattatgtgat 2951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 71842 - 71748
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||||| |||||||||||||| ||||||||| |||| |||||||||  ||||||  | ||  |||||||||||||||| ||||||    
T  71842 acactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacactgacactagtaattacactgaattgtgtgat 71748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 34784916 - 34785018
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    ||||||| |||||| ||| || ||||||||||| |||||||||| ||||||||| ||| |||||  ||||||  | |||| |||||||||| ||||||||    
T  34784916 aagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacactaaattatgt 34785015  T
Q  125 gat 127  Q
    |||    
T  34785016 gat 34785018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 37419860 - 37419766
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| |||||||||||||||||||||||| ||||||  |||||| |||||||||  ||||||    || ||||||||||||||||| ||||||    
T  37419860 acactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaattttgtgat 37419766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 2438672 - 2438727
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  2438672 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccga 2438727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 11223806 - 11223896
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    |||||| || |||||||||||||||||||||||||| ||||||||| ||||||| |   |||||  | || |||||||||||||||||||||    
T  11223806 acactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaattatgt 11223896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 19942371 - 19942316
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||||||||||||||||| || ||||| |||||||||    
T  19942371 acactcctcggattaggcgtgtcccggtgtcagacacatgccgtgtccgacaccga 19942316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 22084761 - 22084824
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtccc---ggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||| |||||||||||||||||||||||||   |||||||||||||||| |||| ||||||    
T  22084761 aagcacagacactcatcggattaggcgtgtcccggtggtgtcagacacgtgttgtgtccgacac 22084824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 35056985 - 35056896
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattat 122  Q
    |||||| || ||||||||||||  | ||||| |||||||||||||| |||||||||  ||||||  | |||| |||||||||||||||||    
T  35056985 acactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 12224337 - 12224274
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||| |||||| | |||||||||||||||| ||||| ||||||| |||||| |||||||||    
T  12224337 aagcacaaacactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacaccga 12224274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 20242672 - 20242735
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||| |||||| |||||| ||||||||||  ||||||||||||||| |||| |||||||||    
T  20242672 aagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccga 20242735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 24009401 - 24009346
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||    
T  24009401 acactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccga 24009346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 26769628 - 26769573
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||| ||| |||||    
T  26769628 acactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccga 26769573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 30717472 - 30717566
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| | ||||||||||| |||| |||||  ||||||||||||| ||||| |||  |||||   | || ||||||||||||||||||||||||    
T  30717472 acactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaattatgtgat 30717566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 38117119 - 38117165
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 86  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||    
T  38117119 tcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacacc 38117165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 14996172 - 14996212
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgt 73  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  14996172 acactcctcggattaggcgtgttccggtgtcagacacgtgt 14996212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 15972972 - 15972924
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||||||| ||||||||| ||| |||||||||||||| |||||||||    
T  15972972 tcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccga 15972924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 36096331 - 36096411
Alignment:
Q  47 aggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    ||||||||||| |||||||||||||||||||| ||||| |||  ||||||  | | || ||||||||||| ||| ||||||    
T  36096331 aggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattacactgcattttgtgat 36096411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 18840966 - 18841021
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||| ||||||||||||| |||| |||||||||  ||||||||    
T  18840966 acactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccga 18841021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 27084375 - 27084320
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| || ||||||||||||| ||||||  |||||||||||||| |||||||||    
T  27084375 acactcctccgattaggcgtgtctcggtgttggacacgtgtcgtgtccgacaccga 27084320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 28596575 - 28596520
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||| ||||||  ||||| |||||||||||||| |||||||||    
T  28596575 acactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccga 28596520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 36756278 - 36756377
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    ||||||| |||||| | |||||||||||||  ||||||| |||| |||| |||||||||||  |  ||||||  | || | |||||||||||||||||||    
T  36756278 aagcacagacactcctaggattaggcgtgttgcggtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaattatgt 36756377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 37411189 - 37411248
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgaca 84  Q
    |||||||  ||||| ||||| |||||||||||| ||||| |||||| |||||||||||||    
T  37411189 aagcacaggcactcctcggactaggcgtgtcccagtgtcggacacgcgtcgtgttcgaca 37411248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 44860437 - 44860347
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatg 123  Q
    |||||| ||| |||||| |||||||| |||| ||||| |||||||| | ||||| |  ||||||  | |||| ||||||||||||||||||    
T  44860437 acactcctcgaattaggtgtgtcccgatgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactgaattatg 44860347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 34993946 - 34993987
Alignment:
Q  44 attaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||||||||||| ||||| ||||| |||||||||||||||    
T  34993946 attaggcgtgtcccagtgtcggacacatgtcgtgttcgacac 34993987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 2331914 - 2331870
Alignment:
Q  28 cacatacactcatcggattaggcgtgtcccggtgtcagacacgtg 72  Q
    |||| ||| |||| ||||||||||||||| |||||||||||||||    
T  2331914 cacagacattcattggattaggcgtgtcctggtgtcagacacgtg 2331870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 10535698 - 10535734
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacac 69  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  10535698 acactcctcggattaggcgtgtcctggtgtcagacac 10535734  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 18054776 - 18054828
Alignment:
Q  64 agacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactg 116  Q
    ||||||| |||||||||||||||||  |||||| || |||| |||||||||||    
T  18054776 agacacgcgtcgtgttcgacaccgacacgacaccaacacatataattacactg 18054828  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 41843560 - 41843500
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    ||||||| |||||| |||||| | ||||||||| ||||| ||||||||||| || ||||||    
T  41843560 aagcacagacactcctcggataaagcgtgtccccgtgtcggacacgtgtcgcgtccgacac 41843500  T

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Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 70384 - 70329
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  70384 acactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccga 70329  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 241704 - 241617
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| |  ||||||  | ||   |||||||||| |||||||||||    
T  241704 tcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaattatgtgat 241617  T

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Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 236919 - 236964
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacg 70  Q
    ||||||| |||||| || ||||||| ||||||||||||||||||||    
T  236919 aagcacagacactcctcagattaggtgtgtcccggtgtcagacacg 236964  T

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Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 415 - 470
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||||||||| ||||||||||||| |||||| ||||||| |||||||||    
T  415 acactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccga 470  T

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Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 45475 - 45538
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    |||||| |||| || | ||||||||| |||| |||||||||||||||||||||| |||||||||    
T  45475 aagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccgacaccga 45538  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 9689 - 9783
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||| ||||||||  ||||||||| ||||||||| |||||||||  |||||| |  ||||||  | |||| |||||||||||||||| |||||    
T  9689 acactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaattaagtgat 9783  T

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Target: scaffold0361 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 14641 - 14580
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 86  Q
    |||||| ||||||| |  ||||||||||||| ||||||| |||||||||||||| |||||||    
T  14641 aagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacacc 14580  T

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Target: scaffold0053 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 8894 - 8849
Alignment:
Q  43 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||    
T  8894 gattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 8849  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 53280 - 53203
Alignment:
Q  50 cgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 127  Q
    |||||||||||||| |||||||||| ||| |||||||||  || |||  | || | ||||||||||||||||||||||    
T  53280 cgtgtcccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgat 53203  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 92928 - 92875
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 86  Q
    |||||| ||||||||||||||||| |||||| |||| ||||||||| |||||||    
T  92928 acactcctcggattaggcgtgtccaggtgtccgacatgtgtcgtgtccgacacc 92875  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 263314 - 263406
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtg 125  Q
    |||||| ||||||||||||||||  ||| ||  |||||||||||||  ||||||||  ||||||  | || | ||||||||||||||||||||    
T  263314 acactcctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacgacactgacacttataattacactgaattatgtg 263406  T

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Target: scaffold0512 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 4981 - 5044
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 88  Q
    ||||||| |||||| ||||||||||| |||| |  |||| |||||||||||||| |||||||||    
T  4981 aagcacagacactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacaccga 5044  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 23636 - 23534
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 124  Q
    ||||||| |||||  | |||||| ||||||||| || || ||||| | |||||| |||||||||  ||||||  | || | |||||||||||||||||||    
T  23636 aagcacaaacacttctgggattatgcgtgtcccagtctcggacacatatcgtgtccgacaccgaaacgacactgacacttataattacactgaattatgt 23537  T
Q  125 gat 127  Q
    |||    
T  23536 gat 23534  T

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Target: scaffold0793 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 4834 - 4879
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||| |||||||||||||||||| ||||| |||| |||||||||    
T  4834 acactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt 4879  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 90957 - 90904
Alignment:
Q  25 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 78  Q
    |||||||||||||||| |||||||||||||   |||||| ||||||||| ||||    
T  90957 aagcacatacactcattggattaggcgtgttttggtgtcggacacgtgttgtgt 90904  T

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Target: scaffold0380 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 8707 - 8655
Alignment:
Q  33 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 85  Q
    |||||| | ||||||||||| |||| ||||| |||||||||||||||| ||||    
T  8707 acactccttggattaggcgtatcccagtgtcggacacgtgtcgtgttcaacac 8655  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 84922 - 84966
Alignment:
Q  40 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgaca 84  Q
    ||||||||||||||||| | |||| ||||||||| ||||||||||    
T  84922 tcggattaggcgtgtcctgttgtcggacacgtgttgtgttcgaca 84966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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