View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6851_low_4 (Length: 651)
Name: NF6851_low_4
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6851_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 349 - 638
Target Start/End: Original strand, 21073242 - 21073530
Alignment:
| Q |
349 |
caatttgtttgcagaaatgatttggtgatttgcattgataattacaccactttagggatgatgtcgtgataaatgtagttataatttctattttgttgca |
448 |
Q |
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| T |
21073242 |
caatttgtttgcagaaataatttggtgatttgcattgataatcacaccactttagggatgatgtcgtgataaatgtagttataatttctattttgttgca |
21073341 |
T |
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| Q |
449 |
gaaatcaattctgccgtcttcaggaagtgatgatcgtcaacactgtcaccgttcagaacggccgtccccggattcaactcaccgtgaagttgaaccaccg |
548 |
Q |
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| T |
21073342 |
gaaatcaattctgccgtcttcaggaagtgatgatcatcaacactgtcaccgttcagaacggccgtccccggattcaactcaccgtgaagttgaaccaccg |
21073441 |
T |
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| Q |
549 |
cgtccgaccaaaagaaaatcagatcaccactctgaacctgaacacgatggcatagcttgtaagtatgaccaccacgactgtcaccaggat |
638 |
Q |
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| T |
21073442 |
cgtccgaccaaaagaaaatcagatcaccactctgaacctgaacacgatggcatagc-tgtaagtatgaccaccacgaccgtcaccaggat |
21073530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 21072890 - 21073180
Alignment:
| Q |
1 |
ctccaaaaatatcatttcatctcaacaagtgtaatttctttgattaatcaggttagaaaaaacttctatctttcnnnnnnnnnn----tcattatataaa |
96 |
Q |
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| T |
21072890 |
ctccaaaaatatcatttcatctcaacaagtgtaatttctttgattaatcaggttagaaaaaacttctatctttcaaaaaaaaaaaaaatcattatataaa |
21072989 |
T |
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| Q |
97 |
taaatatgtatttatttttgtgtcatatgctggaatcaatatttaattgtctttcatgcttctgttaataaagctaagaacatatatgggatgcaggttt |
196 |
Q |
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| T |
21072990 |
taaatatgtattgatttttgtgtcatatgctggactcaatattttatggtctttcatgcttctattaataaagctaagaacatatatgggatgcagattt |
21073089 |
T |
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| Q |
197 |
ccaagactaaaaagacaggtagattactgccttgctcaaagggacatgtaaatatccatttcgtgaagatcgagacattatgcaggttagc |
287 |
Q |
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| T |
21073090 |
ccaagactaaaacgagaggcatattactgccttgctcaaagtgacatgtaaatatccatttcatgaagagcgagacattatgcaggttagc |
21073180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 440 - 575
Target Start/End: Original strand, 41569050 - 41569185
Alignment:
| Q |
440 |
tttgttgcagaaatcaattctgccgtcttcaggaagtgatgatcgtcaacactgtcaccgttcagaacggccgtccccggattcaactcaccgtgaagtt |
539 |
Q |
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||||||||||||| |||||| |||||||||| ||| ||| ||| |||| || ||||||||||||||||||| || || |||||| | |||||||||||| |
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| T |
41569050 |
tttgttgcagaaaccaattccaccgtcttcagcaagcgattatcatcaaaaccgtcaccgttcagaacggccatcgccagattcatcccaccgtgaagtt |
41569149 |
T |
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| Q |
540 |
gaaccaccgcgtccgaccaaaagaaaatcagatcac |
575 |
Q |
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| T |
41569150 |
gaaccaccgcgtccaaccaaaagaaaatcagatcac |
41569185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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