View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6851_low_5 (Length: 592)
Name: NF6851_low_5
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6851_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 16700623 - 16700042
Alignment:
| Q |
1 |
ctacactaattaatagtttgtttataatat--tttgttggattatgtgatattaatatgatggttatgtaaaacttgtggattattgaacaaagttactt |
98 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16700623 |
ctacactaattaatagtttgtttataatatattttgttggattatgtgatattaatatgatggttatgtaaaacttttggattattgaacaaagttactt |
16700524 |
T |
|
| Q |
99 |
aagaatttttgtttgcactaaaccatgtcaagattgaagttcaagctacagaagtttcccaacaagactctgtaacagttactcaagaaaacatggcaac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16700523 |
aagaatttttgtttgcactaaaccatgtcaagattgaagttcaagctacagaagtttcccaacaagactctgtaacagttactcaagaaaacatggcaac |
16700424 |
T |
|
| Q |
199 |
cgtttcacatctaaccaaaaagccattgaagcaaaatgataaagcactaaaaccgtgctggaaccctcctgctccactcagtgagttttcaccattcatg |
298 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16700423 |
cgtttcacatcttaccaaaaagccattgaagcaaaatgataaagcactaaaaccgtgctggaaccctcctgctccactcagtaagttttcaccattcatg |
16700324 |
T |
|
| Q |
299 |
attactcttgcttatgttgcttattgatcattgaagcagtatgaagtagacacaactaaggttttaacttttaagtcatagtcacagtcatggttttaaa |
398 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
16700323 |
attactcttgcatatgttgcttattgatcattgaagcagtatgaagtagacacaactaaggttttaactttataatcatagtcacagtcatggttttaaa |
16700224 |
T |
|
| Q |
399 |
tgcggttgaggtctcggttgcagttacgtgtcaaccgttattgtggtaaaatgtagatgacacgtttgaaattgtggttgtcgaaatgttgtagatactt |
498 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16700223 |
tgcggttgtggtctcggttgcagttacgtgtcaaccgttattgtggtaaaatgtagatgacacatttgaaattgtggttgtcgaaatgttgtagatactt |
16700124 |
T |
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| Q |
499 |
aaaaatcttttatattatggcggttgtggaccgcaatttaaaaccatgatcatagtatactgatagtcgtgtctttgatgtc |
580 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16700123 |
aaaaatgttttatattatggcggttgtggaccgcaatttaaaaccatgatcatagtatactgatagtcgtgtctttgatgtc |
16700042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 546
Target Start/End: Complemental strand, 38917451 - 38917423
Alignment:
| Q |
518 |
gcggttgtggaccgcaatttaaaaccatg |
546 |
Q |
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| T |
38917451 |
gcggttgtggaccgcaatttaaaaccatg |
38917423 |
T |
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