View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6851_low_7 (Length: 418)

Name: NF6851_low_7
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6851_low_7
NF6851_low_7
[»] chr1 (2 HSPs)
chr1 (163-400)||(15156700-15156938)
chr1 (333-400)||(20513289-20513356)
[»] chr8 (5 HSPs)
chr8 (163-403)||(25555600-25555832)
chr8 (333-401)||(1175-1243)
chr8 (333-401)||(14674730-14674798)
chr8 (333-399)||(20133320-20133386)
chr8 (163-236)||(25549303-25549376)
[»] chr3 (2 HSPs)
chr3 (163-403)||(20010997-20011229)
chr3 (333-401)||(33483305-33483373)
[»] chr6 (1 HSPs)
chr6 (163-403)||(22621110-22621342)
[»] chr7 (3 HSPs)
chr7 (168-334)||(19808513-19808677)
chr7 (27-138)||(19808684-19808795)
chr7 (333-399)||(44358685-44358751)
[»] scaffold0076 (1 HSPs)
scaffold0076 (333-401)||(48009-48077)
[»] scaffold0013 (1 HSPs)
scaffold0013 (333-401)||(134884-134952)
[»] chr2 (1 HSPs)
chr2 (333-391)||(23695014-23695072)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 163 - 400
Target Start/End: Complemental strand, 15156938 - 15156700
Alignment:
Q  163 aattatattgtgtgcagttattttcta-gaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggtt 261  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  15156938 aattatattgtgtgctgttattttctaagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggtt 15156839  T
Q  262 cattagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgat 361  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  15156838 cattaggaaaggagagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaggcggtacgataacacaacatggcgat 15156739  T
Q  362 ttctacaaaatcagctcccttgaagccatctagtatcag 400  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  15156738 ttctacaaagtcagctcccttgaagccatctcgtatcag 15156700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 20513289 - 20513356
Alignment:
Q  333 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcag 400  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  20513289 caggcggtacgataacacagcatggcgatttctacaaaatcagctcccttgaagccatctcgtatcag 20513356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 163 - 403
Target Start/End: Original strand, 25555600 - 25555832
Alignment:
Q  163 aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc 262  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||        ||||| ||||||||| ||    
T  25555600 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc 25555691  T
Q  263 attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgatt 362  Q
    ||||| ||||||||||||||||| | |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  25555692 attaggaaaggagagacacaaggatcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaggcggtacgatagcacaacatggcgatt 25555791  T
Q  363 tctacaaaatcagctcccttgaagccatctagtatcaggaa 403  Q
    |||||||| ||||||| ||||||||| ||| ||||||||||    
T  25555792 tctacaaagtcagctctcttgaagccttctcgtatcaggaa 25555832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 1243 - 1175
Alignment:
Q  333 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1243 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctcgtatcagg 1175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 14674730 - 14674798
Alignment:
Q  333 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14674730 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctcgtatcagg 14674798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 20133386 - 20133320
Alignment:
Q  333 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatca 399  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  20133386 caggcggtacgataacacaacatggcgatttctacaaaattagctcccttgaagccatctcgtatca 20133320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 25549303 - 25549376
Alignment:
Q  163 aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaata 236  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  25549303 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata 25549376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 163 - 403
Target Start/End: Complemental strand, 20011229 - 20010997
Alignment:
Q  163 aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc 262  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||        ||||| ||||||||| ||    
T  20011229 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc 20011138  T
Q  263 attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgatt 362  Q
    ||||| |||||| |||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  20011137 attaggaaaggaaagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaggcggtacgatagcacaacatggcgatt 20011038  T
Q  363 tctacaaaatcagctcccttgaagccatctagtatcaggaa 403  Q
    |||||||| ||||||| ||||||||| ||| ||||||||||    
T  20011037 tctacaaagtcagctctcttgaagccttctcgtatcaggaa 20010997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 33483373 - 33483305
Alignment:
Q  333 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 401  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  33483373 caggctgtacgataacacaacatggcgatttctacaaaattagctcccttgaagccatcttgtatcagg 33483305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 163 - 403
Target Start/End: Complemental strand, 22621342 - 22621110
Alignment:
Q  163 aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc 262  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||        ||||| ||||||||| ||    
T  22621342 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc 22621251  T
Q  263 attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgatt 362  Q
    ||||| ||||||||||||||||| | |||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||| |||| ||||||| ||    
T  22621250 attaggaaaggagagacacaaggttcttgaaaccttgtgagtatgtactgtgaatatttctgtgtgatttcaggcggtacgatagcacagcatggcggtt 22621151  T
Q  363 tctacaaaatcagctcccttgaagccatctagtatcaggaa 403  Q
    |||||||| ||||||| ||||||||| ||| ||||||||||    
T  22621150 tctacaaagtcagctctcttgaagccttctcgtatcaggaa 22621110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 168 - 334
Target Start/End: Original strand, 19808513 - 19808677
Alignment:
Q  168 tattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttcattag 267  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |    
T  19808513 tattgtgtgcagttattttctagaatgtg--tattctgttatataaataaagaatagtcagacttaatagttatcttagaattattgtgtggttcattgg 19808610  T
Q  268 aaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttca 334  Q
    |||||||||||||||||||| | | |||||||| |||||||||||| ||||||| ||||| ||||||    
T  19808611 aaaaggagagacacaaggctctcggaaccttgtgagtgtgtactgtgaatatttctgtgtaatttca 19808677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 19808795 - 19808684
Alignment:
Q  27 tgatagaaactgataccaatagtataaatgactgaatattattgtttattattgaatattctctggggaaaggttccctaatcagagataaatatacaat 126  Q
    |||||||||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19808795 tgatagaaactggtaccaataggataaacaactgaatattattgtttattattgaatattctctggggaaaggtttcctaatcagagataaatatacaat 19808696  T
Q  127 cacagacttgta 138  Q
    |||| |||||||    
T  19808695 cacacacttgta 19808684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 44358685 - 44358751
Alignment:
Q  333 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatca 399  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  44358685 caggcggtacgataacacaacatggcgatttctacaaaattagctcccttgaagccatctcgtatca 44358751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 48009 - 48077
Alignment:
Q  333 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 401  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48009 caggcggtacggtaacacaacatggcgatttctacaaaatcagctcccttgaagccatctcgtatcagg 48077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 134952 - 134884
Alignment:
Q  333 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 401  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  134952 caggcggtacaataacacaacatggcgatttctacaaaatcagctcccttgaagccatctcgtatcagg 134884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 23695014 - 23695072
Alignment:
Q  333 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatc 391  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23695014 caggcggtacgataacacagcatggcgatttctacaaaatcagctcccttgaagccatc 23695072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University