View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6851_low_8 (Length: 371)
Name: NF6851_low_8
Description: NF6851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6851_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 99 - 363
Target Start/End: Original strand, 49252420 - 49252684
Alignment:
| Q |
99 |
cacttttactgtaatgggtttcttcttaattttgttgttaatttgattgagataaattatttttattgtagaatactaaaggaaaaggacgattgaagta |
198 |
Q |
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| T |
49252420 |
cacttttactgtaatggttttcttcttaattttgttgttaatttgattgagataaattatttgtattgtagaatactaaaggaaaaggacgattgaagta |
49252519 |
T |
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| Q |
199 |
tctgttgcagcaaactgagttgtttgctcattttgctaaaagtggtcaatcttcgtctcagaagaaggctaagggaaggtactttctcaagattaattgc |
298 |
Q |
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| T |
49252520 |
tctgttgcagcaaactgagttgtttgctcattttgctaaaagtggtcaatcttcgtctcagaagaaggctaagggaaggtactttctcaagattaattgc |
49252619 |
T |
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| Q |
299 |
ataattgtttttcgtttttctgttagtattgagtttttaccgtatagataattgtccatttgtgt |
363 |
Q |
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| T |
49252620 |
ataattgtttttcgtttttctgttagtattgagtttttaccgtatagataattgtccttttgtgt |
49252684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 33556322 - 33556261
Alignment:
| Q |
13 |
gaacaatatcatcaattatgaatcattccagacaagctccaatatttcgatgggattgagga |
74 |
Q |
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| T |
33556322 |
gaacaatatcatcaattatgaatcattccatacaagctccaatatttcgatgggattgagga |
33556261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 6618841 - 6618775
Alignment:
| Q |
168 |
agaatactaaaggaaaaggacgattgaagtatctgttgcagcaaactgagttgtttgctcattttgc |
234 |
Q |
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| T |
6618841 |
agaataatagaggaaaggggcgattgaagtatctcttacagcagactgagctgtttgcccattttgc |
6618775 |
T |
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