View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6852_low_3 (Length: 206)
Name: NF6852_low_3
Description: NF6852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6852_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 51485278 - 51485388
Alignment:
| Q |
77 |
tcagccaaatctaccaccacggccaccaccataactgcaccagtggacccttggaatcaaccaccgcccccactacctacaaccacacaaaatcagcacc |
176 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
51485278 |
tcagccaaatctaccaccacggccaccaccacaactgcaccagtggacccttggaatcaaccaccgcccccaccacctacaaccagacaaaatcagcacc |
51485377 |
T |
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| Q |
177 |
ttctatgacca |
187 |
Q |
| |
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||||||||||| |
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| T |
51485378 |
ttctatgacca |
51485388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 13032598 - 13032708
Alignment:
| Q |
77 |
tcagccaaatctaccaccacggccaccaccataactgcaccagtggacccttggaatcaaccaccgcccccactacctacaaccacacaaaatcagcacc |
176 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13032598 |
tcagccaaatctaccaccacgaccaccaccacaactgcaccagtggacccttggaatcaaccaccgcccccaccacctacaaccacacaaaatcagcacc |
13032697 |
T |
|
| Q |
177 |
ttctatgacca |
187 |
Q |
| |
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| ||||||||| |
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| T |
13032698 |
tactatgacca |
13032708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 11444329 - 11444289
Alignment:
| Q |
136 |
accaccgcccccactacctacaaccacacaaaatcagcacc |
176 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||||| |
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| T |
11444329 |
accaccgccgccaccacctacaaccacacaaaatcagcacc |
11444289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 15123524 - 15123418
Alignment:
| Q |
81 |
ccaaatctaccaccacggccaccaccataactgcaccagtggacccttggaatcaaccaccgcccccactacctacaaccacacaaaatcagcaccttct |
180 |
Q |
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||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||| || |||||||||||||||||||||||| || |
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| T |
15123524 |
ccaaatctatcaccacggccaccaccacaactgcaccactggaccctaggaatcaaccaccgtccccaccacatacaaccacacaaaatcagcacctact |
15123425 |
T |
|
| Q |
181 |
atgacca |
187 |
Q |
| |
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||||||| |
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|
| T |
15123424 |
atgacca |
15123418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 15147712 - 15147606
Alignment:
| Q |
81 |
ccaaatctaccaccacggccaccaccataactgcaccagtggacccttggaatcaaccaccgcccccactacctacaaccacacaaaatcagcaccttct |
180 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||| || |||||||||||||||||||||||| || |
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| T |
15147712 |
ccaaatctatcaccacggccaccaccacaactgcaccactggaccctaggaatcaaccaccgtccccaccacatacaaccacacaaaatcagcacctact |
15147613 |
T |
|
| Q |
181 |
atgacca |
187 |
Q |
| |
|
||||||| |
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|
| T |
15147612 |
atgacca |
15147606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 15115315 - 15115208
Alignment:
| Q |
80 |
gccaaatctaccaccacggccaccaccataactgcaccagtggacccttggaatcaaccaccgcccccactacctacaaccacacaaaatcagcaccttc |
179 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||| |||||||| | |
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| T |
15115315 |
gccaaatctattaccacggccaccaccacaactgcaccagtggaccgttggaatcaaccaccgtccccaccacatacaaccacacaaaagcagcacctac |
15115216 |
T |
|
| Q |
180 |
tatgacca |
187 |
Q |
| |
|
|||||||| |
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|
| T |
15115215 |
tatgacca |
15115208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 15139831 - 15139724
Alignment:
| Q |
80 |
gccaaatctaccaccacggccaccaccataactgcaccagtggacccttggaatcaaccaccgcccccactacctacaaccacacaaaatcagcaccttc |
179 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||| |||||||| | |
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| T |
15139831 |
gccaaatctattaccacggccaccaccacaactgcaccagtggaccgttggaatcaaccaccgtccccaccacatacaaccacacaaaagcagcacctac |
15139732 |
T |
|
| Q |
180 |
tatgacca |
187 |
Q |
| |
|
|||||||| |
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|
| T |
15139731 |
tatgacca |
15139724 |
T |
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