View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6853_high_5 (Length: 373)
Name: NF6853_high_5
Description: NF6853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6853_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 24 - 357
Target Start/End: Original strand, 3427982 - 3428320
Alignment:
| Q |
24 |
ataatgaagtaatgaagatatttcttacacttaatgtgtacgtgtgtggcaatgctccctaaaagaaattagtaacgtggacttaaacgttaattttaac |
123 |
Q |
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| T |
3427982 |
ataatgaagtaatgaagatatttcttacacttaatgtgtacgtgtgtggcaatgctccctaaaagaaattagtaacgtggacttaaacgttaattttgac |
3428081 |
T |
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| Q |
124 |
atttagcgaattggaatcggaatttgttgtttgctaatgcatatatggtttgaatgttttaacattaccgtatgcattttgagtactactattggcac-- |
221 |
Q |
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| T |
3428082 |
atttagcgaattggaatcggaatttgttgtttgctaatgc--atatggtttgaatgttttaacattaccgtatccattttgagtactactattggcaccc |
3428179 |
T |
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| Q |
222 |
-----ccaaaattcaaatcaaaataatgaaaattctacccacatagaagtccgaacacgtaaatagtattatagtgggcaggttagctgtgaatggaagt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3428180 |
aaagtccaaaattcaaatcaaaataatgaaaattctacccacatagaagtccgaacacgtaaatagtattatagtgggcaggttagctgtgaatggaagt |
3428279 |
T |
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| Q |
317 |
aagaaagatctttttacatgcgtatctaatttatttgtttg |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
3428280 |
aagaaagatctttttacatgcgtatctaatttatttgtttg |
3428320 |
T |
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